Detailed information NTG0874563

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: WJ044_RS02455
• Genome accession: NZ_CP149499
• Coordinates: 468100..470673 (-)
• Length: 857 a.a.
• NCBI ID: WP_016818289.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain CIP 702
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 463100..475673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJ044_RS02445 (WJ044_02445)	maf	465593..466144 (+)	552	WP_002882416.1	septum formation inhibitor Maf	-
WJ044_RS02450 (WJ044_02450)	pbpA	466141..468072 (+)	1932	WP_016818290.1	penicillin-binding protein 1A	-
WJ044_RS02455 (WJ044_02455)	clpC	468100..470673 (-)	2574	WP_016818289.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
WJ044_RS02460 (WJ044_02460)	-	470785..471075 (-)	291	WP_002872629.1	metal-sensing transcriptional repressor	-
WJ044_RS02465 (WJ044_02465)	-	471193..472527 (+)	1335	WP_002872630.1	S41 family peptidase	-
WJ044_RS02470 (WJ044_02470)	purC	472529..473239 (+)	711	WP_002867669.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
WJ044_RS02475 (WJ044_02475)	purS	473248..473493 (+)	246	WP_002872631.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
WJ044_RS02480 (WJ044_02480)	purQ	473495..474167 (+)	673	Protein_477	phosphoribosylformylglycinamidine synthase I	-
WJ044_RS02485 (WJ044_02485)	-	474139..475335 (+)	1197	WP_002882470.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95527.63 Da
• Isoelectric Point: 5.2764

>NTDB_id=874563 WJ044_RS02455 WP_016818289.1 468100..470673(-) (clpC) [Campylobacter jejuni strain CIP 702]
MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDNASILNQILNKLNISKEALELEIKSRISKLATSSNAN
RENIRFSNELINSLENAKGLMSANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQNALNSQFENEKSVFDGISTKKKEID
LLKNEASLAKARGEFQKAAELEYGKIPSLEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDTKDDEIIIKKA

Nucleotide

• Length: 2574 bp

>NTDB_id=874563 WJ044_RS02455 WP_016818289.1 468100..470673(-) (clpC) [Campylobacter jejuni strain CIP 702]
ATGGCAAATATACAAGATTTTTTAACTGATAATATGCTTTCAAACCTTGAAAGTGCAGCATCTTTAGCTATACATTCTAA
AAATAATGAAGTTGTACCTTTACATCTTTTATGGGCTTTAAGCGTAGATAATGCAAGTATTTTAAATCAAATTTTAAATA
AATTAAATATTTCTAAAGAAGCCTTAGAACTTGAAATTAAAAGCAGAATTTCAAAACTTGCAACGAGTTCAAATGCAAAC
CGTGAAAATATACGCTTTTCCAATGAACTTATAAATTCATTAGAAAATGCTAAAGGATTGATGAGTGCTAATGGAGATAG
TTATTTAAGTGTGGATACTTGGCTTATAAGTGAAAGTCAAAAAAGTCCTATTAAAGAAATTTTAGCGCAATTTTTAGATT
TAAGAGAATTTCAAAAAGAGCTTGAAAGTCTAAGAGCGGGACGCAAAATCGATAGCAAAACAAGCGATGAAACCTTAGAC
AGCTTAAATAAATTTGGTATAGATTTAACCTTAAAAGCAAGCGAGGGTAAACTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGTTTGATGCAAATTTTAATACGCAAAACCAAAAATAACCCTATACTTTTAGGTGAACCAGGCGTAGGAAAAA
CAGCTATAGTAGAAGCTTTAGCACAAAGAATTATCAAAAAAGATGTTCCAAAATCTTTGCAAAATAAAAAAGTTATCGCT
CTTGATATGAGTGCTTTAATTGCAGGTGCAAAATACAGAGGAGAATTCGAAGATAGATTAAAAGCTGTGGTTAATGAAGT
GATAAAAAGTGAAAACATCATTCTTTTTATCGATGAAATTCACACTATAGTAGGAGCTGGAGCTAGTGAAGGCAGTATGG
ATGCGGCAAATATTTTAAAACCCGCTCTTGCAAGAGGAGAACTGCATACCATAGGAGCAACTACTTTAAAAGAATATCGT
AAATATTTTGAAAAAGATGCAGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGTGAGCCAAGTGTTAATGAGGCTTT
GGCTATGTTAAGGGGTATAAAAGAAAAGCTTGAAATTCATCATAATGTAACCATAAATGATAGTGCTTTAGTAGCTGCAG
CTAAACTTTCAAAGCGTTATATAGCGGATCGTTTTTTACCTGATAAGGCTATTGATTTAATCGATGAAGCTGCAGCTGAA
CTAAAAATGCAAATTGAAAGCGAACCAAGTTCTTTAAGAAAAGTACGTAAAGATATAGAAACTTTAGAAGTTGAAAATGA
AGCTTTAAAAATGGAAAATGATGAGAAAAATCAAAAAAGACTTGATGAAATCGCAAAAGAACTAGCCAATTTAAAAGAAA
AACAAAATGCCCTAAATTCACAGTTTGAAAATGAAAAAAGTGTTTTTGATGGTATAAGCACTAAGAAAAAAGAAATTGAT
CTACTTAAAAATGAAGCTTCTTTAGCTAAAGCTAGAGGTGAATTTCAAAAAGCAGCCGAGCTAGAGTATGGAAAAATTCC
AAGTCTTGAAAAAGAAGTAGAAATTTTAGAAGATAAATGGAAAAAAATGAGTGAAAATGGAGTTTTGCTTAAAAATCAAG
TAGATGAGGATTTGGTTGCTGGAATTTTAAGCAAATGGACGGGTATTAGCGTGCAAAAAATGCTAACTTCCGAAAAACAA
AAATTCTTAGAAGTGGAAAAACATTTAAAAGAAAGTGTCATAGGGCAAGATAAGGCCTTAAGTGCTTTAGCTAGAGCCAT
TAAACGCAACAAAGCAGGGCTTAATGCGGACAATAAACCTATAGGAAGCTTTTTATTTTTAGGGCCAACAGGGGTAGGAA
AAACACAATCAGCTAAAGCTTTGGCGAAATTTTTATTTGACGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGTGTTTCAAGACTCTTAGGTGCACCTCCAGGATACATAGGACATGAAGAAGGTGGAGAGCTTACTGA
AGCTGTGCGAAGAAAACCTTATAGCGTGCTTTTGTTTGATGAAGTTGAAAAAGCACATAAAGATGTATTTAATGTGCTTT
TAGGGATTTTAGATGATGGTAGAGCAACCGATAGCAAAGGTGTAACAGTGGATTTTAAAAATACCATTATCATTTTAACT
TCTAATATCGCCTCAAGTGCTATTATGAATTTAAGCGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAGTTTTTAAACCGTTTAGATGATATTATCACCTTTAATCCACTTGGAAAAGATGAAGCTTATGAAATAG
TCAAGCTTTTATTTAAAGATTTACAAATGAGCTTAGAAAACAAGGGAATAAAAGCAAGTTTAAGCGAAAATGCAGCCCTT
TTAATCGCTAAAGATGGTTTTGACCCTGATTTTGGTGCTAGACCTTTAAGAAGAGCTATTTATGATCTTATAGAAGATAA
ATTAAGCGATATGATACTTGCTGATGAACTTCATGAAAATGATAGCATTATCATTGATACAAAAGATGATGAAATAATCA
TCAAAAAAGCTTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-844)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• AAA lid domain (AAA_lid_9) (342-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.407	100	0.434
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	40.873	100	0.415