Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RDV58_RS00240 Genome accession   NZ_CP133475
Coordinates   41224..41937 (+) Length   237 a.a.
NCBI ID   WP_002274633.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 36224..46937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS00225 (RDV58_00225) - 37005..37343 (-) 339 Protein_39 lipase -
  RDV58_RS00230 (RDV58_00230) treC 37429..39057 (-) 1629 WP_002279989.1 alpha,alpha-phosphotrehalase -
  RDV58_RS00235 (RDV58_00235) treP 39083..41050 (-) 1968 WP_002279988.1 PTS system trehalose-specific EIIBC component -
  RDV58_RS00240 (RDV58_00240) treR 41224..41937 (+) 714 WP_002274633.1 trehalose operon repressor Regulator
  RDV58_RS00245 (RDV58_00245) - 42064..42201 (+) 138 WP_002279987.1 hypothetical protein -
  RDV58_RS00250 (RDV58_00250) dexA 42283..44835 (-) 2553 WP_080036121.1 dextranase DexA -
  RDV58_RS00255 (RDV58_00255) dtd 45323..45769 (-) 447 WP_002269409.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27793.15 Da        Isoelectric Point: 9.7425

>NTDB_id=874555 RDV58_RS00240 WP_002274633.1 41224..41937(+) (treR) [Streptococcus mutans strain LMG 14558]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIVDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=874555 RDV58_RS00240 WP_002274633.1 41224..41937(+) (treR) [Streptococcus mutans strain LMG 14558]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTGTTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATTACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.578

100

0.996