Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | RDV54_RS06880 | Genome accession | NZ_CP133471 |
| Coordinates | 1449760..1452192 (-) | Length | 810 a.a. |
| NCBI ID | WP_001109666.1 | Uniprot ID | A0A0F2DH07 |
| Organism | Streptococcus mitis strain LMG 14557 | ||
| Function | degradation of ComW (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1444760..1457192
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RDV54_RS06850 (RDV54_06850) | - | 1444913..1445599 (-) | 687 | WP_000764010.1 | DUF1275 family protein | - |
| RDV54_RS06855 (RDV54_06855) | - | 1445726..1446409 (-) | 684 | WP_000730894.1 | hypothetical protein | - |
| RDV54_RS06860 (RDV54_06860) | - | 1446688..1446918 (+) | 231 | WP_000933124.1 | hypothetical protein | - |
| RDV54_RS06865 (RDV54_06865) | - | 1446990..1447763 (-) | 774 | WP_000132693.1 | NUDIX domain-containing protein | - |
| RDV54_RS06870 (RDV54_06870) | pnuC | 1447765..1448544 (-) | 780 | WP_000736875.1 | nicotinamide riboside transporter PnuC | - |
| RDV54_RS06875 (RDV54_06875) | - | 1448554..1449612 (-) | 1059 | WP_000730574.1 | AAA family ATPase | - |
| RDV54_RS06880 (RDV54_06880) | clpC | 1449760..1452192 (-) | 2433 | WP_001109666.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| RDV54_RS06885 (RDV54_06885) | - | 1452194..1452652 (-) | 459 | WP_001211265.1 | CtsR family transcriptional regulator | - |
| RDV54_RS06890 (RDV54_06890) | - | 1452771..1453499 (-) | 729 | WP_000136238.1 | ABC transporter ATP-binding protein | - |
| RDV54_RS06895 (RDV54_06895) | - | 1453499..1454506 (-) | 1008 | WP_000754556.1 | ABC transporter substrate-binding protein | - |
| RDV54_RS06900 (RDV54_06900) | - | 1454545..1455303 (-) | 759 | WP_161969982.1 | ABC transporter permease | - |
| RDV54_RS06905 (RDV54_06905) | - | 1455266..1455556 (-) | 291 | WP_000647684.1 | thiamine-binding protein | - |
| RDV54_RS06910 (RDV54_06910) | cbpD | 1455809..1456918 (-) | 1110 | WP_000798432.1 | choline binding-anchored murein hydrolase CbpD | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 90191.94 Da Isoelectric Point: 5.9151
>NTDB_id=874500 RDV54_RS06880 WP_001109666.1 1449760..1452192(-) (clpC) [Streptococcus mitis strain LMG 14557]
MNYSKALNECIESAYMVAGHFGARYLESWHLLIAMSNHSYSVAGATLNDYPYEMDRLEEVALELTETDYSQDETFTELPF
SHRLQVLFDEAEYVASVVHAKVLGTEHVLYAILHDGNALATRILERAGFSYEDKKDQVKIAALRRNLEERAGWTREDLKA
LRQRHRTVADKQNSMANMMGMPQTPSGGLEDYTHDLTEQARSGKLEPVIGRDKEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIASGDVPAEMAKMRVLELDLMNVVAGTRFRGDFEERMNNIIKDIEEDGQVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVTIEEPSVADSMIILQGLKATYEKHHRVQITDEAVET
AVKMAHRYLTSRHLPDSAIDLLDEAAATVQNKAKHVKADDSGLSPADKALIDGKWKQAAQLIAKEEEVPVYKDLVTESDI
LTTLSRLSGIPVQKLTQTDAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK
ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDD
GVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQENMEKRIFEELKKTYRPEFINRIDEKVVFHSLDS
DHMQEIVKIMVKPLIASLAEKGIDLKLQASALKLLASHGYNPEMGARPLRRTLQTEVEDKLAELLLKGELEAGSTLKIGV
KAGQLKFDIV
MNYSKALNECIESAYMVAGHFGARYLESWHLLIAMSNHSYSVAGATLNDYPYEMDRLEEVALELTETDYSQDETFTELPF
SHRLQVLFDEAEYVASVVHAKVLGTEHVLYAILHDGNALATRILERAGFSYEDKKDQVKIAALRRNLEERAGWTREDLKA
LRQRHRTVADKQNSMANMMGMPQTPSGGLEDYTHDLTEQARSGKLEPVIGRDKEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIASGDVPAEMAKMRVLELDLMNVVAGTRFRGDFEERMNNIIKDIEEDGQVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVTIEEPSVADSMIILQGLKATYEKHHRVQITDEAVET
AVKMAHRYLTSRHLPDSAIDLLDEAAATVQNKAKHVKADDSGLSPADKALIDGKWKQAAQLIAKEEEVPVYKDLVTESDI
LTTLSRLSGIPVQKLTQTDAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK
ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDD
GVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQENMEKRIFEELKKTYRPEFINRIDEKVVFHSLDS
DHMQEIVKIMVKPLIASLAEKGIDLKLQASALKLLASHGYNPEMGARPLRRTLQTEVEDKLAELLLKGELEAGSTLKIGV
KAGQLKFDIV
Nucleotide
Download Length: 2433 bp
>NTDB_id=874500 RDV54_RS06880 WP_001109666.1 1449760..1452192(-) (clpC) [Streptococcus mitis strain LMG 14557]
ATGAACTATTCAAAAGCATTGAATGAATGTATCGAAAGTGCCTACATGGTGGCTGGCCATTTTGGAGCTCGTTACCTAGA
GTCTTGGCACTTGTTGATTGCCATGTCTAATCACAGTTATAGTGTGGCAGGGGCGACTTTAAATGATTATCCATATGAGA
TGGACCGTTTAGAAGAGGTCGCTTTGGAACTGACTGAAACGGACTATAGCCAGGATGAAACCTTTACGGAATTGCCGTTT
TCTCATCGTTTGCAGGTCCTTTTTGACGAAGCAGAGTATGTAGCGTCAGTGGTCCATGCTAAGGTGCTAGGGACAGAGCA
TGTCCTCTATGCGATTTTGCATGATGGCAATGCCTTGGCGACTCGTATCTTGGAGAGAGCTGGTTTTTCTTATGAAGACA
AGAAAGATCAGGTCAAGATTGCTGCCCTACGTCGAAATCTAGAAGAACGAGCAGGTTGGACTCGTGAAGATCTCAAGGCT
TTACGCCAACGCCATCGTACAGTAGCTGATAAGCAAAATTCTATGGCTAATATGATGGGCATGCCCCAGACTCCAAGCGG
TGGTCTCGAGGACTATACGCATGATTTGACAGAGCAAGCGCGTTCTGGCAAGTTAGAGCCAGTTATCGGTCGGGACAAGG
AAATCTCGCGTATGATTCAAATTTTGAGTCGGAAGACTAAGAATAATCCTGTCTTGGTTGGGGATGCTGGTGTCGGAAAA
ACAGCTCTGGCGCTTGGACTTGCCCAGCGTATTGCTAGTGGGGACGTGCCTGCGGAAATGGCTAAGATGCGCGTGTTAGA
GCTGGATTTGATGAATGTCGTTGCAGGGACACGCTTCCGTGGTGACTTTGAAGAGCGCATGAATAATATCATCAAGGATA
TTGAGGAAGATGGTCAAGTAATTCTCTTTATCGATGAACTCCACACTATCATGGGTTCTGGTAGTGGAATTGACTCAACT
CTGGATGCGGCCAATATCTTGAAACCAGCCTTGGCGCGTGGAACTTTGAGAACGGTTGGTGCGACCACTCAGGAAGAATA
TCAAAAACACATCGAAAAAGATGCGGCCCTTTCTCGTCGTTTCGCGAAAGTGACGATTGAAGAGCCAAGCGTGGCCGACA
GTATGATCATTTTACAGGGTTTGAAGGCGACTTATGAGAAACATCACCGTGTGCAAATCACAGATGAAGCAGTTGAAACA
GCTGTCAAGATGGCTCATCGTTACTTGACTAGTCGTCACTTGCCAGACTCTGCTATTGATCTCTTGGATGAAGCAGCAGC
AACAGTGCAAAATAAGGCTAAGCATGTAAAAGCAGACGATTCAGGTTTGAGTCCAGCTGACAAGGCCTTGATAGATGGTA
AGTGGAAACAGGCAGCTCAGTTAATCGCAAAAGAAGAGGAAGTGCCTGTCTATAAAGACTTGGTGACAGAGTCTGATATT
TTGACCACCTTGAGTCGCTTGTCAGGTATTCCAGTCCAAAAACTGACTCAGACTGATGCTAAGAAATACCTAAACTTGGA
AGCTGAACTGCACAAACGTGTCATCGGTCAAGATCAAGCTGTTTCAAGTATTAGCCGTGCCATTCGCCGCAATCAGTCAG
GGATTCGCAGTCACAAGCGTCCGATTGGTTCCTTTATGTTCCTAGGACCTACAGGTGTCGGTAAGACCGAATTGGCCAAG
GCTCTAGCAGAAGTTCTTTTTGATGACGAATCAGCCCTTATCCGCTTTGATATGAGTGAGTATATGGAGAAATTTGCAGC
CAGTCGTCTCAACGGAGCTCCTCCAGGCTATGTGGGGTATGAAGAAGGTGGGGAGTTGACCGAGAAGGTTCGCAACAAAC
CATACTCTGTTCTCCTCTTTGATGAGGTAGAAAAAGCCCACCCAGACATCTTTAATGTCCTCTTGCAGGTCTTGGATGAT
GGTGTCTTGACAGATAGCAAGGGGCGCAAGGTTGACTTTTCAAATACCATTATCATCATGACGTCAAATCTTGGTGCGAC
AGCCCTTCGGGATGACAAGACCGTCGGTTTTGGAGCTAAGGATATTCGTTTTGATCAGGAAAATATGGAAAAACGAATCT
TTGAAGAGTTGAAAAAAACTTATCGACCAGAGTTTATCAACCGTATTGATGAAAAGGTGGTCTTCCACAGTTTGGATAGC
GACCACATGCAGGAAATTGTCAAGATTATGGTTAAACCATTGATTGCTAGCCTGGCAGAGAAGGGCATCGACTTAAAACT
ACAAGCTTCGGCACTGAAGTTGCTAGCTAGTCACGGTTACAATCCAGAAATGGGAGCTCGTCCACTTCGCAGAACCCTAC
AAACAGAAGTGGAAGACAAGTTGGCAGAACTTCTTCTCAAGGGAGAATTAGAGGCAGGCAGCACACTTAAGATTGGTGTT
AAAGCAGGCCAGTTAAAATTTGATATTGTATAA
ATGAACTATTCAAAAGCATTGAATGAATGTATCGAAAGTGCCTACATGGTGGCTGGCCATTTTGGAGCTCGTTACCTAGA
GTCTTGGCACTTGTTGATTGCCATGTCTAATCACAGTTATAGTGTGGCAGGGGCGACTTTAAATGATTATCCATATGAGA
TGGACCGTTTAGAAGAGGTCGCTTTGGAACTGACTGAAACGGACTATAGCCAGGATGAAACCTTTACGGAATTGCCGTTT
TCTCATCGTTTGCAGGTCCTTTTTGACGAAGCAGAGTATGTAGCGTCAGTGGTCCATGCTAAGGTGCTAGGGACAGAGCA
TGTCCTCTATGCGATTTTGCATGATGGCAATGCCTTGGCGACTCGTATCTTGGAGAGAGCTGGTTTTTCTTATGAAGACA
AGAAAGATCAGGTCAAGATTGCTGCCCTACGTCGAAATCTAGAAGAACGAGCAGGTTGGACTCGTGAAGATCTCAAGGCT
TTACGCCAACGCCATCGTACAGTAGCTGATAAGCAAAATTCTATGGCTAATATGATGGGCATGCCCCAGACTCCAAGCGG
TGGTCTCGAGGACTATACGCATGATTTGACAGAGCAAGCGCGTTCTGGCAAGTTAGAGCCAGTTATCGGTCGGGACAAGG
AAATCTCGCGTATGATTCAAATTTTGAGTCGGAAGACTAAGAATAATCCTGTCTTGGTTGGGGATGCTGGTGTCGGAAAA
ACAGCTCTGGCGCTTGGACTTGCCCAGCGTATTGCTAGTGGGGACGTGCCTGCGGAAATGGCTAAGATGCGCGTGTTAGA
GCTGGATTTGATGAATGTCGTTGCAGGGACACGCTTCCGTGGTGACTTTGAAGAGCGCATGAATAATATCATCAAGGATA
TTGAGGAAGATGGTCAAGTAATTCTCTTTATCGATGAACTCCACACTATCATGGGTTCTGGTAGTGGAATTGACTCAACT
CTGGATGCGGCCAATATCTTGAAACCAGCCTTGGCGCGTGGAACTTTGAGAACGGTTGGTGCGACCACTCAGGAAGAATA
TCAAAAACACATCGAAAAAGATGCGGCCCTTTCTCGTCGTTTCGCGAAAGTGACGATTGAAGAGCCAAGCGTGGCCGACA
GTATGATCATTTTACAGGGTTTGAAGGCGACTTATGAGAAACATCACCGTGTGCAAATCACAGATGAAGCAGTTGAAACA
GCTGTCAAGATGGCTCATCGTTACTTGACTAGTCGTCACTTGCCAGACTCTGCTATTGATCTCTTGGATGAAGCAGCAGC
AACAGTGCAAAATAAGGCTAAGCATGTAAAAGCAGACGATTCAGGTTTGAGTCCAGCTGACAAGGCCTTGATAGATGGTA
AGTGGAAACAGGCAGCTCAGTTAATCGCAAAAGAAGAGGAAGTGCCTGTCTATAAAGACTTGGTGACAGAGTCTGATATT
TTGACCACCTTGAGTCGCTTGTCAGGTATTCCAGTCCAAAAACTGACTCAGACTGATGCTAAGAAATACCTAAACTTGGA
AGCTGAACTGCACAAACGTGTCATCGGTCAAGATCAAGCTGTTTCAAGTATTAGCCGTGCCATTCGCCGCAATCAGTCAG
GGATTCGCAGTCACAAGCGTCCGATTGGTTCCTTTATGTTCCTAGGACCTACAGGTGTCGGTAAGACCGAATTGGCCAAG
GCTCTAGCAGAAGTTCTTTTTGATGACGAATCAGCCCTTATCCGCTTTGATATGAGTGAGTATATGGAGAAATTTGCAGC
CAGTCGTCTCAACGGAGCTCCTCCAGGCTATGTGGGGTATGAAGAAGGTGGGGAGTTGACCGAGAAGGTTCGCAACAAAC
CATACTCTGTTCTCCTCTTTGATGAGGTAGAAAAAGCCCACCCAGACATCTTTAATGTCCTCTTGCAGGTCTTGGATGAT
GGTGTCTTGACAGATAGCAAGGGGCGCAAGGTTGACTTTTCAAATACCATTATCATCATGACGTCAAATCTTGGTGCGAC
AGCCCTTCGGGATGACAAGACCGTCGGTTTTGGAGCTAAGGATATTCGTTTTGATCAGGAAAATATGGAAAAACGAATCT
TTGAAGAGTTGAAAAAAACTTATCGACCAGAGTTTATCAACCGTATTGATGAAAAGGTGGTCTTCCACAGTTTGGATAGC
GACCACATGCAGGAAATTGTCAAGATTATGGTTAAACCATTGATTGCTAGCCTGGCAGAGAAGGGCATCGACTTAAAACT
ACAAGCTTCGGCACTGAAGTTGCTAGCTAGTCACGGTTACAATCCAGAAATGGGAGCTCGTCCACTTCGCAGAACCCTAC
AAACAGAAGTGGAAGACAAGTTGGCAGAACTTCTTCTCAAGGGAGAATTAGAGGCAGGCAGCACACTTAAGATTGGTGTT
AAAGCAGGCCAGTTAAAATTTGATATTGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus pneumoniae TIGR4 |
98.022 |
99.877 |
0.979 |
| clpC | Streptococcus pneumoniae Rx1 |
98.022 |
99.877 |
0.979 |
| clpC | Streptococcus pneumoniae D39 |
98.022 |
99.877 |
0.979 |
| clpC | Streptococcus mutans UA159 |
67.445 |
100 |
0.678 |
| clpC | Streptococcus thermophilus LMD-9 |
66.503 |
100 |
0.669 |
| clpC | Streptococcus thermophilus LMG 18311 |
66.38 |
100 |
0.668 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.095 |
100 |
0.502 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
44.994 |
99.877 |
0.449 |
| clpE | Streptococcus mutans UA159 |
48.674 |
79.136 |
0.385 |
| clpE | Streptococcus pneumoniae Rx1 |
46.835 |
78.025 |
0.365 |
| clpE | Streptococcus pneumoniae D39 |
46.835 |
78.025 |
0.365 |
| clpE | Streptococcus pneumoniae R6 |
46.835 |
78.025 |
0.365 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
46.955 |
77.037 |
0.362 |