Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   RDV54_RS05025 Genome accession   NZ_CP133471
Coordinates   1060401..1060694 (-) Length   97 a.a.
NCBI ID   WP_000797746.1    Uniprot ID   A0A2N6PR83
Organism   Streptococcus mitis strain LMG 14557     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1055401..1065694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS05015 (RDV54_05015) metF 1056657..1057523 (-) 867 WP_000089956.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  RDV54_RS05020 (RDV54_05020) metE 1057627..1059876 (-) 2250 WP_000108228.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  RDV54_RS05025 (RDV54_05025) HI0659 1060401..1060694 (-) 294 WP_000797746.1 helix-turn-helix domain-containing protein Machinery gene
  RDV54_RS05030 (RDV54_05030) - 1060684..1061049 (-) 366 WP_000556942.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RDV54_RS05035 (RDV54_05035) - 1061205..1061570 (-) 366 WP_001241814.1 TIGR02328 family protein -
  RDV54_RS05040 (RDV54_05040) - 1061554..1061958 (-) 405 WP_000527884.1 YbgA family protein -
  RDV54_RS05045 (RDV54_05045) - 1062026..1062727 (-) 702 WP_000748126.1 hypothetical protein -
  RDV54_RS05050 (RDV54_05050) - 1062862..1064250 (-) 1389 WP_115262365.1 hypothetical protein -
  RDV54_RS05055 (RDV54_05055) - 1064247..1065314 (-) 1068 WP_000415506.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10765.46 Da        Isoelectric Point: 7.0172

>NTDB_id=874483 RDV54_RS05025 WP_000797746.1 1060401..1060694(-) (HI0659) [Streptococcus mitis strain LMG 14557]
MKNSAIGSNWKDVRSELFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQRKS

Nucleotide


Download         Length: 294 bp        

>NTDB_id=874483 RDV54_RS05025 WP_000797746.1 1060401..1060694(-) (HI0659) [Streptococcus mitis strain LMG 14557]
ATGAAGAATAGTGCTATTGGGAGTAACTGGAAGGATGTCAGGTCAGAACTCTTTACCAAGGAGGAAATACTTGAAAGTGA
TATGCGAGTGGCTATCATGAGTGAGTTGATTGAAGCCAGACATGAGCAAGGAATCAGCCAGAAAAAGCTAGAGGAACTCA
GTGGAGTGAGCCAGCCTGTCATAGCTAGGATGGAAACAGGAAAGACAAGTCCTCAGTTGGATACAGTCTTGAAAGTTTTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTCCCACTTGAACAGAGAAAGAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6PR83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557