Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RDV54_RS02325 Genome accession   NZ_CP133471
Coordinates   445681..447483 (+) Length   600 a.a.
NCBI ID   WP_000244089.1    Uniprot ID   A0A081SCJ2
Organism   Streptococcus mitis strain LMG 14557     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 440681..452483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS02305 (RDV54_02305) rnr 440977..443331 (+) 2355 WP_000654876.1 ribonuclease R -
  RDV54_RS02310 (RDV54_02310) smpB 443294..443761 (+) 468 WP_001051750.1 SsrA-binding protein SmpB -
  RDV54_RS02315 (RDV54_02315) tehB 443776..444636 (+) 861 WP_000413782.1 SAM-dependent methyltransferase TehB -
  RDV54_RS02320 (RDV54_02320) coiA 444709..445662 (+) 954 WP_000495920.1 competence protein CoiA Machinery gene
  RDV54_RS02325 (RDV54_02325) pepF 445681..447483 (+) 1803 WP_000244089.1 oligoendopeptidase F Regulator
  RDV54_RS02330 (RDV54_02330) - 447485..448198 (+) 714 WP_004239376.1 O-methyltransferase -
  RDV54_RS02335 (RDV54_02335) prsA 448265..449203 (+) 939 WP_000727954.1 peptidylprolyl isomerase PrsA -
  RDV54_RS02340 (RDV54_02340) ftsW 449364..450587 (+) 1224 WP_000703370.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69921.80 Da        Isoelectric Point: 4.5649

>NTDB_id=874471 RDV54_RS02325 WP_000244089.1 445681..447483(+) (pepF) [Streptococcus mitis strain LMG 14557]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDITEQLETVAQYEGHLLDSADSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEEQYADFLEAQPKLQVYQHYFDKLLQGKDHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKNREVRRGAYQALYATYQQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLNLRSKILGISDLKMYDVYTPLSSVEYSFTYREALK
KAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGNQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGMA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=874471 RDV54_RS02325 WP_000244089.1 445681..447483(+) (pepF) [Streptococcus mitis strain LMG 14557]
ATGGTATTACAAAGACATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATCTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATATAACAGAACAATTGGAGACAGTAGCCCAGTATGAAGGCCATCTCCTGGATAGTGCGGATAGTC
TACTCGAAATTACTGAATTTTCTCTTGAAATGGAACGCCAAATGGAGAAGCTTTACGTTTATGCTCATATGAAGAATGAC
CAAGACACACGTGAAGCCAAGTACCAAGAGTACTATGCCAAGGCCATGACTCTCTATAGCCAGCTAGACCAAGCCTTTTC
ATTCTATGAACCTGAATTTATGGAGATTAGTGAAGAGCAGTATGCTGACTTTTTAGAAGCTCAGCCAAAATTGCAGGTTT
ATCAACACTATTTTGACAAGCTTTTGCAAGGCAAGGATCACGTTCTTTCACAACGCGAAGAAGAATTATTGGCTGGAGCT
GGGGAAATCTTTGGTTCGGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTGTTCCCTTATGTTCTTGACGA
TGATGGTAAGGAAGTTCAGCTATCTCATGGGACTTACACACGTTTGATGGAGTCTAAAAATCGTGAGGTTCGTCGTGGTG
CCTATCAAGCCCTTTATGCGACTTATCAACAATTCCAACACACCTATGCCAAAACCTTGCAAACCAATGTTAAGGTGCAA
AACTACCGTGCCAAAGTTCGCAACTACAAGAGCGCTCGTCATGCAGCCCTAGCAGCCAATTTTGTTCCAGAGAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGCTATCTTAACCTTCGTTCAAAAATCCTGGGAA
TTTCAGACCTCAAGATGTACGATGTCTACACACCACTTTCTTCTGTTGAATACAGTTTTACCTACCGAGAAGCCTTGAAA
AAGGCAGAAGATGCCTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTCAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAACCAAGGCAAGCGTTCAGGTGCTTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTACTTAATT
GGCAGGACAATTTAGACAATCTCTTTACCCTTGTTCATGAAACAGGTCACAGTATGCATTCAAGCTATACTCGTGAAACG
CAGCCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCATCAACTACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGATGATGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGGACAGTTT
TCCGTCAAACTCAATTTGCTGAGTTTGAACACGCGATTCACCAAGCGGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCTCGCATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACTGGCTTTGCAGCAGCCTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAATCAAGAAGACCGTGACCGCTATATCGACTATCTCAAGGCAGGTAAGTCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGAGTTGATATGGAGAAGGAAGACTACCTCAACGATGCCTTTGCAGTCTTTGAACGTCGTTT
AAATGAGTTTGAAGCACTTGTTGAAAAATTGGGAATGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081SCJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.946

99.333

0.665