Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   RDV53_RS07270 Genome accession   NZ_CP133470
Coordinates   1478597..1479313 (+) Length   238 a.a.
NCBI ID   WP_080553589.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473597..1484313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS07245 (RDV53_07245) thiP 1473720..1475324 (+) 1605 WP_005695658.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -
  RDV53_RS07250 (RDV53_07250) thiQ 1475317..1475946 (+) 630 WP_005695661.1 thiamine ABC transporter ATP-binding protein -
  RDV53_RS07255 (RDV53_07255) bioB 1476020..1477036 (+) 1017 WP_005695662.1 biotin synthase BioB -
  RDV53_RS07260 (RDV53_07260) suhB 1477082..1477882 (-) 801 WP_005695663.1 inositol-1-monophosphatase -
  RDV53_RS07265 (RDV53_07265) comN 1478082..1478600 (+) 519 WP_005695664.1 hypothetical protein Machinery gene
  RDV53_RS07270 (RDV53_07270) comO 1478597..1479313 (+) 717 WP_080553589.1 type II secretion system protein J Machinery gene
  RDV53_RS07275 (RDV53_07275) comP 1479310..1479996 (+) 687 WP_005695666.1 DUF2572 family protein Machinery gene
  RDV53_RS07280 (RDV53_07280) comQ 1480010..1480276 (+) 267 WP_005699425.1 DUF5374 domain-containing protein Machinery gene
  RDV53_RS07285 (RDV53_07285) recC 1480314..1483673 (+) 3360 WP_005695669.1 exodeoxyribonuclease V subunit gamma -
  RDV53_RS07290 (RDV53_07290) nrdR 1483751..1484200 (+) 450 WP_005695670.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26733.88 Da        Isoelectric Point: 7.5531

>NTDB_id=874453 RDV53_RS07270 WP_080553589.1 1478597..1479313(+) (comO) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRATNPKLIEDNLAL
FELDEKGTAIIIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNEKMIETKQTYKNAV
NADCRSAECQRALAQFTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLTGHLAAYKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=874453 RDV53_RS07270 WP_080553589.1 1478597..1479313(+) (comO) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGAAACCATTAAAAGGCGAAACATTGGTGAGTTTGTTGATTTCACTTGGCTTATCCGCTTTATTGTTGCTATTGGTTGC
ACAGTTTTATGCTCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTCAAATTACAAGCGGAATTACAACGTACTA
TTCAACTCATCGGTAAAGATCTGCGTCGCGTAGGCTTTCGAGCCACAAACCCAAAACTAATCGAGGATAATCTGGCTTTA
TTTGAATTAGACGAAAAGGGCACAGCAATAATCATTGCTCAAGCAGACAATGCTCCATCAAATAGCTGCGTCTTATTTTT
TTATGATTTAAATAGTAATGGCTGTATTGGTGAAAAATACACAAAAAACACCTGCGTAAACGGTGTTAAAAATGTGGCAA
AAAATATCGAAAAAGAGCTGTTTGGTTACAAACTTAACGAGAAAATGATCGAAACCAAACAAACTTATAAAAATGCGGTA
AATGCGGATTGTCGTTCAGCAGAGTGTCAGAGAGCCTTAGCTCAATTTACTTGTAACGCCGGTGGGGGATGGACAGATTT
ATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATTAAACTCA
CAGGGCATCTTGCCGCATATAAGCATATTCAATATGAAACTTCGCTTGTAGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

62.393

98.319

0.613