Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RDV53_RS01565 Genome accession   NZ_CP133470
Coordinates   325654..326607 (-) Length   317 a.a.
NCBI ID   WP_032822621.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320654..331607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS01545 (RDV53_01545) - 321956..322906 (-) 951 WP_005696712.1 sigma 54-interacting transcriptional regulator -
  RDV53_RS01550 (RDV53_01550) - 323027..323935 (-) 909 WP_005696713.1 siderophore ABC transporter substrate-binding protein -
  RDV53_RS01555 (RDV53_01555) - 323950..324711 (-) 762 WP_005696714.1 ABC transporter ATP-binding protein -
  RDV53_RS01560 (RDV53_01560) - 324702..325661 (-) 960 WP_005696715.1 iron chelate uptake ABC transporter family permease subunit -
  RDV53_RS01565 (RDV53_01565) ceuB 325654..326607 (-) 954 WP_032822621.1 ABC transporter permease Machinery gene
  RDV53_RS01570 (RDV53_01570) mepM 326741..328216 (-) 1476 WP_005696718.1 murein DD-endopeptidase MepM -
  RDV53_RS01575 (RDV53_01575) znuC 328395..329189 (+) 795 WP_005696719.1 zinc ABC transporter ATP-binding protein ZnuC -
  RDV53_RS01580 (RDV53_01580) znuB 329199..329984 (+) 786 WP_005696720.1 zinc ABC transporter permease subunit ZnuB -
  RDV53_RS01585 (RDV53_01585) accA 330072..331019 (+) 948 WP_005696721.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35028.23 Da        Isoelectric Point: 10.2040

>NTDB_id=874429 RDV53_RS01565 WP_032822621.1 325654..326607(-) (ceuB) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MIKRRYLIFLLIVLSFISLFLGVSTVNLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGVFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=874429 RDV53_RS01565 WP_032822621.1 325654..326607(-) (ceuB) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGATTAAGCGACGTTATCTGATTTTTCTTTTGATCGTGCTTTCCTTTATTTCACTTTTTCTCGGGGTAAGTACTGTTAA
TCTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATATTTTTCATTAGTCGAGTGCCTCGTTTAATCAGTATCT
TGATTGCGGGTGCATCCTTAAGTATTTGTGGCTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCCACCACT
GCGGGCACCATGGATAGTGCAAGATTAGGGATTTTAATGGCGATGCTGTTTTTCCCAACGGCTTCAATGTTGTTAAAAAC
CACCATTGCGGTGATTGTGTCTTTCCTTGGTACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACCA
TTTTTGTACCTTTAGTGGGGATTATGTTTGGTAATATCATCAGTTCAATTACTGCTTTTATTGCTTACAAAGAAGATTTA
TTACAAAACCTATCTGGATGGCTACAAGGGGATTTCTCGCTTGTGATGTCTGGTCGTTATGAATTGTTATATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCCCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAGGTACTTTATCTCGGTCTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGTTGGC
GTGATCCCTTTCTTGGGGCTAATTATTCCAAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACCGCTTTGTTAGGTGCGGTATTTGTTTTATTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGTGTATTCGGTAGTGGTGTCTTCTTATTTTTATTATTAAAGCGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543