Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   RDV53_RS00285 Genome accession   NZ_CP133470
Coordinates   61358..63760 (-) Length   800 a.a.
NCBI ID   WP_005696427.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 56358..68760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS00265 (RDV53_00265) kdsB 57561..58319 (-) 759 WP_005697219.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RDV53_RS00270 (RDV53_00270) - 58329..58508 (-) 180 WP_005696424.1 Trm112 family protein -
  RDV53_RS00275 (RDV53_00275) lpxK 58525..59505 (-) 981 WP_032822464.1 tetraacyldisaccharide 4'-kinase -
  RDV53_RS00280 (RDV53_00280) msbA 59559..61307 (-) 1749 WP_005696426.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  RDV53_RS00285 (RDV53_00285) rec2 61358..63760 (-) 2403 WP_005696427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RDV53_RS00290 (RDV53_00290) dksA 64021..64458 (+) 438 WP_005696429.1 RNA polymerase-binding protein DksA -
  RDV53_RS00295 (RDV53_00295) pcnB 64555..66051 (+) 1497 WP_370447717.1 polynucleotide adenylyltransferase PcnB -
  RDV53_RS00300 (RDV53_00300) folK 66051..66554 (+) 504 WP_005696431.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RDV53_RS00305 (RDV53_00305) dcuC 66609..67967 (-) 1359 WP_005696432.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89985.30 Da        Isoelectric Point: 9.5040

>NTDB_id=874427 RDV53_RS00285 WP_005696427.1 61358..63760(-) (rec2) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MKITLFQLCMMFIVSALSLLVVPDFLLFTWQRAGLGILLLVMTTLCSHWFNYFKARNFCMSGILFLLTLAYAHSPALSLL
GQAEKISSLPNKITLDLYISEILHQQDYQTLVARTSLFDGKEQQIFINWKAPEKPQVGEIWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKMSEDFSYRTHFLQTSLNQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARFLQLALPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALLFIAILQFSRRYYTPSKMLC
LVVAFLLFCDPLMPLSVSFWLSVGAVTCLIVWYRYVPLSIIEWQHQKLSRKVRWILGLFHLQLGLLILFTPIQLFFFNGF
ALNGFLANLIAVPLYSFLLVPLILFAVLTNGAFSSWHLSNTIAQGITQFLSIFQGSYVPISINLSLILTALLSLVFGGML
YGLYFASQRKTKNTPLKSSRFFTLNSTKILSSEAYKQALLGVILISSFCIGTLGYRYITKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQSGIGGSSMAELEILPYLQREGIELETLILSHDDNDHSGGAKTILTAYSEIELITPSRKSYGEMHRT
FCLQGKQWQWRGLDFKILSPTQITDRAENPQSCVILLTDGQYQILLTGDADVATERSFAENLGKINVLQVGHHGSKTSTG
EFLLGQTKPDIALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=874427 RDV53_RS00285 WP_005696427.1 61358..63760(-) (rec2) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGAAAATCACGCTATTTCAACTGTGCATGATGTTTATTGTTTCTGCCTTATCCTTGCTTGTAGTACCTGATTTTTTACT
GTTTACCTGGCAACGAGCAGGGCTGGGCATTTTATTGCTGGTTATGACCACACTTTGTTCCCATTGGTTCAATTATTTTA
AAGCTAGAAATTTTTGCATGAGCGGTATCTTGTTTTTGCTTACTTTGGCTTATGCGCATTCACCTGCTTTATCGTTATTG
GGACAAGCAGAGAAAATTTCAAGTTTACCAAATAAAATCACCTTAGATCTTTATATCTCAGAAATTCTTCATCAACAAGA
TTATCAAACGTTGGTTGCAAGAACGTCATTATTTGATGGGAAAGAACAACAGATTTTTATTAATTGGAAAGCGCCGGAAA
AGCCACAAGTAGGTGAAATTTGGCGGGCTGATGTAAAACTTCGACCTATTTCTGCAAGACTTAATCATGGGGGATTTGAT
CGACAGCAATGGTATTTTTCCAAAAGGATTATTGCCGTTGGAAATGTGAAAAGTGCGGTCAAAATGAGCGAAGATTTTTC
TTACCGCACACATTTTCTACAGACTAGCCTCAATCAGACAGAGGGGCTTTCTTTGCAAGGCTTGCTTATTGCATTGGCAT
TTGGTGAGCGGGCTTGGTTAGATAATAAAACATGGCTGATTTACCAACAAACGAATACGGCACATTTGATTGCCATTTCA
GGGCTCCATATTGGTTTAGCAATGGGAATAGGCTTTTTCTTTGCTCGATTCTTGCAACTCGCACTGCCTACACGCTTTAT
TTCACCCTGGTTTCCACTTTGCTTTGGTGTGTTGATTGCTTTAGGTTATGCCTATTTAGCCGGATTTAGTTTACCGACCT
TCCGTGCAATGATGGCATTGCTTTTTATTGCAATCCTTCAATTTTCGCGACGATATTACACGCCTTCGAAAATGCTTTGT
TTGGTCGTGGCATTTCTGCTTTTTTGTGATCCACTTATGCCACTTTCGGTTAGCTTTTGGCTTTCAGTTGGTGCTGTTAC
CTGCCTGATTGTATGGTACCGATATGTTCCCTTATCAATAATCGAGTGGCAACATCAAAAATTATCCCGCAAAGTGCGGT
GGATTTTGGGCTTGTTTCATTTGCAACTTGGGCTGCTGATTTTATTCACGCCTATTCAACTTTTCTTTTTTAATGGCTTT
GCGTTAAATGGATTCTTGGCGAATTTAATCGCAGTGCCCTTGTATAGTTTCTTACTGGTACCCTTGATTCTCTTTGCAGT
GTTAACGAATGGCGCATTTTCTTCTTGGCATCTTTCAAATACGATTGCTCAAGGTATTACGCAATTTCTCAGTATTTTCC
AAGGCTCGTATGTTCCGATTTCGATTAATTTATCCCTCATTCTGACCGCACTTTTAAGCCTTGTTTTTGGCGGAATGTTA
TATGGTTTGTATTTTGCATCTCAAAGGAAAACAAAAAACACACCGCTAAAATCAAGTCGATTTTTCACATTAAACAGCAC
AAAAATCTTATCGTCAGAAGCTTATAAACAAGCTCTTTTAGGTGTTATTCTTATTTCTAGTTTTTGTATTGGTACTCTTG
GGTATCGATATATCACGAAACCCAAATGGCAGTTAGATACGTTAGATGTGGGACAAGGTTTAGCAACCTTAATTGTAAAA
GAAGGGAAAGGCGTGTTGTATGATACGGGGCCCGCTTGGCAGAGTGGAATAGGTGGCTCTTCTATGGCGGAATTAGAAAT
ATTGCCTTATCTTCAACGGGAAGGGATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAATGACCATTCAGGCGGTG
CTAAAACGATTTTAACCGCATACTCAGAGATTGAGCTGATTACACCTTCTCGCAAAAGCTATGGCGAAATGCACCGCACT
TTTTGTCTTCAGGGGAAACAATGGCAGTGGCGAGGACTTGATTTTAAAATTCTTTCACCAACGCAAATTACAGACAGGGC
GGAAAATCCGCAATCTTGCGTAATTTTACTAACGGATGGGCAGTATCAGATCCTTTTAACTGGTGATGCTGATGTGGCGA
CAGAAAGATCTTTTGCTGAAAACCTCGGCAAGATTAACGTGTTACAGGTGGGGCATCATGGTAGTAAAACTTCAACAGGC
GAGTTTTTACTGGGACAGACAAAACCGGATATAGCCTTAATTTCAAGTGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTGATTGAACGGTTAAATCGTTATCAAAGTGCGGTCGAAAATACCGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAGGGCATTGAAATTGAAAAAGCGAGAGGAGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-478)

Domain of unknown function (DUF4131) (DUF4131)

(35-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

59.95

100

0.602