Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   RDV50_RS09970 Genome accession   NZ_CP133462
Coordinates   2067814..2069577 (+) Length   587 a.a.
NCBI ID   WP_137040832.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2062814..2074577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS09940 (RDV50_09940) recR 2063322..2063927 (+) 606 WP_070748766.1 recombination mediator RecR -
  RDV50_RS09945 (RDV50_09945) - 2064017..2064367 (+) 351 WP_244285023.1 helix-turn-helix domain-containing protein -
  RDV50_RS09950 (RDV50_09950) - 2064271..2065167 (+) 897 WP_137040834.1 IS3 family transposase -
  RDV50_RS09955 (RDV50_09955) - 2065253..2065540 (-) 288 WP_003683377.1 hypothetical protein -
  RDV50_RS09960 (RDV50_09960) - 2065755..2067005 (+) 1251 WP_137040833.1 lipoprotein-releasing ABC transporter permease subunit -
  RDV50_RS09965 (RDV50_09965) lolD 2066998..2067681 (+) 684 WP_003683651.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RDV50_RS09970 (RDV50_09970) recD 2067814..2069577 (+) 1764 WP_137040832.1 exodeoxyribonuclease V subunit alpha Machinery gene
  RDV50_RS09975 (RDV50_09975) - 2069927..2070142 (+) 216 WP_244285021.1 hypothetical protein -
  RDV50_RS09980 (RDV50_09980) - 2070236..2070637 (-) 402 WP_036490717.1 RNA-binding S4 domain-containing protein -
  RDV50_RS09985 (RDV50_09985) - 2070842..2071801 (+) 960 WP_070748760.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  RDV50_RS09990 (RDV50_09990) tilS 2071890..2073215 (+) 1326 WP_137040831.1 tRNA lysidine(34) synthetase TilS -
  RDV50_RS09995 (RDV50_09995) rpoE 2073435..2074034 (+) 600 WP_137040830.1 RNA polymerase sigma factor RpoE -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64831.97 Da        Isoelectric Point: 5.5158

>NTDB_id=874409 RDV50_RS09970 WP_137040832.1 2067814..2069577(+) (recD) [Neisseria subflava strain LMG 5313]
MNPTDSILSSAADAAIAFFRRHEVQGASIIETYVVRLFAALQNGHSFIYLDKADVDALSNLPNLVGNADKPLILQGWKLF
LGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDTKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPSIKAHLENLEGQTVHRLLKLRPPQMRPAFNHEHPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPDHGFEIKGQPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVTLLYQKQQNYWQAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPVTTESEEEARGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALKWQFEQPDEQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=874409 RDV50_RS09970 WP_137040832.1 2067814..2069577(+) (recD) [Neisseria subflava strain LMG 5313]
ATGAATCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCAGCCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGCGC
ATCCATTATTGAGACTTATGTGGTTCGATTGTTTGCAGCCTTGCAAAACGGGCATTCGTTCATTTACTTGGATAAAGCGG
ATGTCGATGCCTTAAGCAACTTGCCGAACTTGGTCGGTAATGCGGATAAACCGCTTATCCTGCAAGGCTGGAAATTGTTT
TTGGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTTGAAATCAAACGACTGGCCAGTGCCGAGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGATACTAAAGACAGTAAAGAGCAACGGGATGCTGCGGCTTTGG
CTTTGCTGCAAAATTTTATGTTGATTACCGGCGGGCCGGGTACGGGTAAGACGACGACAGTAGCAAAGCTTTTGGGTCTG
ATTTGCAATAACAGTACGAAGCTGCCACGTATCGCGTTGGCGGCGCCGACGGGCAAAGCGGCTGCGCATATGGCGCGAGC
CTTACAGCGTGCTTTAGACGGTTTTGATTTGTCTCCGAGCATTAAAGCGCATTTGGAAAATTTGGAAGGGCAGACCGTCC
ATCGATTATTGAAATTGAGGCCGCCGCAAATGCGCCCTGCGTTCAATCATGAACATCCGCTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCTTCGATGTTGGATTTGCCGCTGGTGTTGGATTTGTTGCGTGCCGTGCCTACTGGCTGTCGTCTGGTGTT
GCTTGGCGATGAAAACCAGTTGCCGTCGGTTGGCTTGGGAGCTGTGTTGGCGGCATTGTCGCGTCCGACAGCTTTGGATA
AAGAAACTGCTGAAAAGTTGGAAGTGTACCTGCCCGATCATGGCTTTGAGATTAAAGGGCAGCCACAGGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGCCACCGTTTTGGTGCAGACAGCGGTATCGGTTGTTTGGCGAGGGCGGTGGTATCTGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTCCCCAAAGAATTGGAAATGAAATCAGGCCGTCTGAAAGAGCAGG
TCACCTTGCTGTATCAAAAGCAACAGAATTATTGGCAGGCCGTGGCAGAGAATAATGTTGCACTCGCCTATGGTCATGCT
GCCGATGTGGTGGTATTGGCGGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATACTTGCAACGACA
AGGCAAGGTTTCGGGCGAAACGCCTTGGTTTGCCGGACAAATCATTATGATTACGCACAATGATTACATGCTGGAAGTGT
TTAATGGCGACATCGGGCTGATTATGAAAGATGAAGAATCGTTGAATGGCTTGTCTGCATATTTTCCTGAGAAAGATGGA
TTTAAAAAAATTGCCATCAGCCGTTTGCCTGATTTTGAATCGGCTTTTGCCATGACGGTGCACAAGAGCCAAGGTTCGGA
ATATCGAGAAGTGTGGCTGTTGCCCCCGTCAGTGCCTGTAACGACGGAAAGCGAAGAGGAAGCCCGAGGTTTGGATAAGG
CTTTGCTTTACACAGCCATTACCCGTGCGCGTGAACGATTTGTGTTTTGGGGAAATGCGGAGGAATTGTGTCAGGCTGTG
GGATGCCACCAAAAACGCAGGACGGCATTGGCCGATGCCTTGAAATGGCAGTTTGAACAGCCTGATGAGCAGGCTTCCGT
TTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_19)

(127-278)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.406

98.296

0.574