Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   RDV50_RS09225 Genome accession   NZ_CP133462
Coordinates   1927337..1930993 (-) Length   1218 a.a.
NCBI ID   WP_137040929.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922337..1935993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS09205 (RDV50_09205) - 1922894..1923745 (+) 852 WP_137040933.1 DUF5672 family protein -
  RDV50_RS09210 (RDV50_09210) - 1923790..1924626 (-) 837 WP_137040932.1 DUF4198 domain-containing protein -
  RDV50_RS09215 (RDV50_09215) - 1925014..1926063 (+) 1050 WP_208648095.1 sulfate ABC transporter substrate-binding protein -
  RDV50_RS09220 (RDV50_09220) dinB 1926141..1927199 (+) 1059 WP_137040930.1 DNA polymerase IV -
  RDV50_RS09225 (RDV50_09225) recB 1927337..1930993 (-) 3657 WP_137040929.1 exodeoxyribonuclease V subunit beta Machinery gene
  RDV50_RS09230 (RDV50_09230) - 1931138..1931908 (-) 771 WP_137040928.1 hemagglutinin repeat-containing protein -
  RDV50_RS09235 (RDV50_09235) - 1932039..1932176 (-) 138 WP_167480294.1 hypothetical protein -
  RDV50_RS09240 (RDV50_09240) - 1932273..1932413 (-) 141 WP_308862626.1 hypothetical protein -
  RDV50_RS09245 (RDV50_09245) - 1932441..1932749 (-) 309 WP_308186868.1 hypothetical protein -
  RDV50_RS09250 (RDV50_09250) - 1932752..1932934 (-) 183 WP_137040926.1 hypothetical protein -
  RDV50_RS09255 (RDV50_09255) terL 1933093..1934445 (+) 1353 WP_244285035.1 phage terminase large subunit -
  RDV50_RS09260 (RDV50_09260) - 1934442..1935329 (+) 888 WP_244285033.1 hypothetical protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 137981.21 Da        Isoelectric Point: 5.7455

>NTDB_id=874403 RDV50_RS09225 WP_137040929.1 1927337..1930993(-) (recB) [Neisseria subflava strain LMG 5313]
MSSALPFDALTLSINGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNE
IQTLGGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKATLSQFDNASIYTIHGFCQRVLRDY
AFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTLAQLVFDRKCTPEEMLAEIKSYTGRPYLKFRRPEGSLKEAQAN
LQETWQKVCGQLEDLEKVFWTILPKLNGQTYKRNTFENVFIDLKTNAESSHLPRLSKQTLGKLSLFSIDTLNSKLKKEYK
ADADAPEIIQLQALANLGRDLQAMESAEEAVFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALTIHEHGNALA
KVATANWEIALIDEFQDTDPLQYEIFRQIFIEQGCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAK
LINGISALFKQKKHPFVLENIDYSDVSASRAKSRLSPHRPAIQVRWLNTDDQTGKEILRGRAAEYCADEIAFALNEAAEG
RLNFKGRALESGDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLF
GYTAKEIYELNHNEHQLLKWLESSAEAMEKWRKGGIFAAVQQFAALHDIETRLLKGGNERSLTNYYQILELLAEEDSQSR
NPAALHKWLNEQIGRARGGHFPSDAQTIRLESDEKLVKIVTIHASKGLQYPLVYCPFAWDTKDNSKENWKILHTENHETE
LLATSQTSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLPDAGRESVSQSYKSATDVV
EMLKTNWQRFIKNAPENTEFAFTEEAPPETVYQYSRQQDQAFGAHSIKRRDFDFIRHTSFTGLSRHTKSTDEQHEPLQPA
IDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFEDKWLPTVSAML
DTCRLTPLIGESLSQIPPTRRLPEMGFTLYMDDFKLDDLRHWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQD
SDGNVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALRGKPLTKIAIRYLFLRGMDGSERGIWK
WDIDTALLSTFVERKTNS

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=874403 RDV50_RS09225 WP_137040929.1 1927337..1930993(-) (recB) [Neisseria subflava strain LMG 5313]
ATGTCTTCCGCCCTTCCTTTTGACGCGCTCACACTTTCCATCAACGGCACCAACCTCATCGAAGCTTCTGCCGGTACGGG
TAAAACCTACGGCATTGCCGCGCTCTTTACCCGACTGATTGTTTTAGAAAAAAAAGACATCGAGAAAATTCTGGTCGTTA
CCTTTACCAAGGCGGCGACGGCAGAACTGAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTATTGCAGGTTTTGAACGAA
ATCCAAACTTTGGGCGGCAAGCCGGAACATATTTCAGACGGCCTGAACAAATATTACGAAAAAGAGAAAAAATCCCCCGA
TGACTTTCTCAATCGCTTGATTCCTTTGGCTTTAGGTGAGCAAGACGGACAGGAAAGCTGCCATCGCCTGATTCTCCGCC
TCAAAGCCACGCTGAGCCAGTTTGACAACGCCTCGATTTACACTATCCACGGCTTCTGTCAGCGCGTTTTGCGCGATTAT
GCGTTTTTGTGCGGCGCGCCTTTGGATGTCGAGCTGTCGGACGACTCGCGCGAGAGGCTGCTGATTCCTGCGCAGGACTT
TTGGCGGCAGAAAGTGGCAACCGATACCACATTGGCACAATTGGTTTTTGACCGGAAATGCACGCCTGAAGAAATGCTTG
CCGAAATCAAAAGCTACACCGGCCGCCCCTATCTGAAATTCAGACGGCCTGAAGGCAGTTTGAAAGAAGCCCAAGCCAAC
CTTCAAGAAACATGGCAAAAAGTTTGCGGTCAGTTGGAAGACTTGGAAAAAGTGTTTTGGACAATCTTGCCCAAACTTAA
TGGCCAGACCTACAAAAGAAATACCTTTGAAAATGTTTTTATCGATTTAAAAACAAACGCCGAATCCAGTCATCTGCCCC
GCCTGAGCAAACAAACGCTAGGGAAATTAAGCCTCTTCAGTATCGACACGCTCAACAGCAAACTGAAAAAAGAATATAAA
GCCGATGCCGATGCGCCGGAAATTATCCAGCTGCAAGCCTTGGCCAATCTCGGTCGTGATTTGCAAGCAATGGAAAGCGC
GGAAGAAGCGGTCTTCATCTGCCTGCAACTCGATCTCCTTTCCTACATCAACCAATCTATTGCCGAACAAAAAAAATCAC
GCCGCGAGCGCGTGTTTGACGATTTGCTGCTGGATGTCCATCAGGCATTGACCATCCATGAACACGGCAACGCATTGGCA
AAAGTGGCGACGGCAAACTGGGAAATCGCGCTGATTGACGAATTCCAAGATACCGACCCGCTGCAATATGAAATTTTCCG
CCAAATTTTTATCGAACAAGGCTGCCCGCTGTTTCTCGTTGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGG
ACATTTACGCCTATCTGCAAGCCGCGCAAGATGCGGACAGGCATTACACCCTCGCCGTCAACTACCGCAGCCATGCCAAG
CTGATCAACGGCATCAGCGCCTTGTTCAAACAAAAAAAACATCCATTCGTATTGGAAAACATCGATTACAGCGATGTCTC
CGCCAGCCGTGCCAAAAGCCGGCTGTCGCCACACCGCCCCGCCATCCAAGTGCGCTGGCTCAATACGGACGACCAAACCG
GCAAAGAAATTTTGCGCGGCCGTGCCGCCGAATATTGCGCCGATGAAATTGCCTTTGCGCTCAATGAAGCAGCCGAAGGC
CGTCTGAACTTCAAAGGCCGTGCATTGGAATCCGGCGATATTGCCGTCTTGGTACGCACCAACAACGAAGCGGCGATGAT
TGCCGGTAAACTGAAACAGCGCCGTATCCAAAGCGTGTTGCTGTCGCGCCAGTCCGTTTTCGATTCCGCCGAGGCAGACT
CGCTGTCCGCGCTGATCGGCTTTTGGCTCAACCCAAGGCAAACCGACTGGCTGCGCTTTGTCTTAACTGGCGTTTTATTC
GGCTATACCGCCAAAGAGATTTACGAACTCAACCACAACGAACACCAGCTACTGAAATGGCTGGAATCGTCTGCCGAAGC
CATGGAAAAATGGCGTAAAGGCGGCATTTTTGCCGCCGTGCAGCAGTTTGCCGCCCTACATGACATCGAAACACGCCTGC
TCAAAGGCGGCAACGAACGCAGCCTGACCAACTACTACCAAATTCTGGAGCTTTTGGCCGAAGAAGACAGCCAAAGCCGC
AACCCTGCCGCCCTGCATAAATGGCTGAACGAACAAATCGGCCGTGCGCGCGGCGGCCATTTCCCGTCAGACGCGCAAAC
CATCCGTCTTGAAAGCGACGAAAAACTGGTCAAAATCGTTACCATACACGCGTCGAAAGGTTTGCAATATCCTTTGGTGT
ACTGCCCCTTTGCATGGGATACCAAAGACAATTCCAAAGAAAACTGGAAAATCCTGCATACAGAAAACCACGAAACCGAG
CTGCTGGCAACATCGCAAACCTCGGAAGCAGAACTAAGCCACCTTGCCGACGAAAAGACGGCAGAAGATTTGCGCCTGCT
CTATGTCGCCCTTACCCGCGCCGAAGAACAGCTCAACATCTACGCCGCCGCCAACAAAAACTGTACGCCAAACAATCCTT
TTGCCTATCTGCTCGAAGGTTTGCCGGATGCCGGCCGCGAAAGCGTCAGTCAAAGCTATAAAAGCGCGACAGATGTTGTG
GAAATGCTCAAAACCAACTGGCAGCGCTTTATCAAAAACGCGCCTGAAAATACGGAGTTTGCCTTCACGGAAGAAGCCCC
GCCGGAAACCGTCTACCAATACAGCCGCCAGCAAGACCAAGCTTTTGGCGCACATAGCATCAAACGCCGCGATTTTGACT
TTATCCGCCACACCAGCTTTACCGGTTTGAGCAGACACACCAAGTCAACCGACGAACAACACGAGCCTTTGCAACCTGCC
ATCGACCCGGCAGAAAGCGCAGACCGTGCCATGCCGTCTGAAAACCTGCCGTCCCCGCTTTCAGACGGCCTCGATATCCA
TCATTTCCCCCGCGGCACCAATGCCGGCGTATGTTTGCATGAAATGTTGGAAAAACTCGACTTCGCCGCCTCTGCCGAGA
GCCAATCCGAAATGATTGCCGAAGTTTTGCAACGCCACAGCTTTGAAGACAAATGGCTGCCGACGGTAAGCGCCATGCTC
GACACCTGCCGCCTGACGCCTTTAATCGGCGAGAGCCTGTCGCAGATTCCGCCAACCCGACGCCTGCCCGAAATGGGGTT
CACCCTGTACATGGACGATTTCAAACTGGACGACTTGCGCCATTGGTTTGCCTCAAGCGAAGCAAACCTGCCGCCCGAAT
GCGTCCAAGCCGCGCAACTGCTTGATTTCCATGATTTGCAAGGCTATTTAAACGGCTTTATCGATATGGTTTGCCAAGAT
TCAGACGGCAATGTCGTTTTAATCGACTACAAATCCAACCATTTGGGCAACGATGCAAGCGCCTACACGCAACAGGCGAT
GAACGAAGCCGTGGCGCATCATCACTACTACCTGCAAGCCCTGATCTACGCCGTTGCCATTGCGCGCTACTACGCCCTGC
GCGGCAAGCCGTTGACCAAAATCGCCATCCGCTACCTCTTCCTACGCGGCATGGACGGCTCGGAACGAGGCATTTGGAAA
TGGGACATCGATACCGCCCTGCTTTCCACTTTTGTTGAACGAAAAACAAATTCTTGA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(12-465)

UvrD-like helicase C-terminal domain (UvrD_C)

(469-842)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(995-1189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.315

99.097

0.598