Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   RDV50_RS09130 Genome accession   NZ_CP133462
Coordinates   1909904..1911052 (+) Length   382 a.a.
NCBI ID   WP_137040941.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1904904..1916052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS09100 (RDV50_09100) rsmA 1905497..1906276 (+) 780 WP_137040947.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  RDV50_RS09105 (RDV50_09105) - 1906292..1906957 (+) 666 WP_137040946.1 sel1 repeat family protein -
  RDV50_RS09110 (RDV50_09110) - 1906960..1907688 (+) 729 WP_137040945.1 amino acid ABC transporter ATP-binding protein -
  RDV50_RS09115 (RDV50_09115) - 1907752..1908111 (+) 360 WP_137040944.1 hypothetical protein -
  RDV50_RS09120 (RDV50_09120) - 1908116..1908568 (+) 453 WP_137040943.1 protein YgfX -
  RDV50_RS09125 (RDV50_09125) folC 1908607..1909890 (+) 1284 WP_137040942.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  RDV50_RS09130 (RDV50_09130) tpc 1909904..1911052 (+) 1149 WP_137040941.1 cell division protein FtsN Machinery gene
  RDV50_RS09135 (RDV50_09135) - 1911045..1911578 (+) 534 WP_137040940.1 CvpA family protein -
  RDV50_RS09140 (RDV50_09140) purF 1911731..1913272 (+) 1542 WP_137040939.1 amidophosphoribosyltransferase -
  RDV50_RS09145 (RDV50_09145) greB 1913347..1913838 (+) 492 WP_003685038.1 transcription elongation factor GreB -
  RDV50_RS09150 (RDV50_09150) plsY 1913926..1914537 (-) 612 WP_137040938.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RDV50_RS09155 (RDV50_09155) folB 1914596..1914946 (+) 351 WP_049329397.1 dihydroneopterin aldolase -
  RDV50_RS09160 (RDV50_09160) - 1914993..1915640 (+) 648 WP_137040937.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41799.81 Da        Isoelectric Point: 9.9754

>NTDB_id=874401 RDV50_RS09130 WP_137040941.1 1909904..1911052(+) (tpc) [Neisseria subflava strain LMG 5313]
MSDNKQKETPNGYDLDGYERLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQSQIKTADEPSKAVVLE
PNKEDVAAAEEAARHADAEASNKPQNAGDEEDNAPVEVLKPNRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAAARKTQAQQEAAEKENALAAKKRALQARAEKAEREAAAERNKLAQLEKAEKAIAERK
SAKNSKDSVKDKAEPAKKVEAKVEKPKNEKAKPETAKAEKADKVKTAEKPSEKAKPKAEKETAEAKPAKKAAIQAGYAEK
ERAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=874401 RDV50_RS09130 WP_137040941.1 1909904..1911052(+) (tpc) [Neisseria subflava strain LMG 5313]
ATGTCCGACAATAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACGACTCAAACGTCGCAACCGCCG
TCGCTTGGTCTTGGCCTCCGGCTTGGTGGTGGCATCGGGTATGCTGTTCGGTCTGGCGCTGACTTCCGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCGCCTGTCGGTCAGAGCCAAATCAAAACGGCTGACGAGCCGAGCAAGGCGGTTGTTTTAGAG
CCTAATAAAGAGGATGTCGCTGCTGCTGAGGAGGCTGCCCGCCATGCGGATGCCGAAGCATCAAATAAACCGCAAAATGC
AGGCGACGAAGAAGATAATGCGCCGGTTGAAGTATTGAAGCCAAACCGTGAATCTGCTCCTGAAGATGTCGGCGAGCCGT
TGGTTTTGATCAACGATACTTTGGATGACGGCAATATTAAAGGCTTGGAAGAGTCCGAGCGTATTCAACGCGCCGAGGCT
GCCAAACGTGAAGCTGCGGAGCGCCGAGCCGAAGAACGCCGCCAACGTCAGGCTGAACAACGTGCTGCTGCGGCCCGTAA
AACACAAGCCCAACAGGAAGCTGCTGAGAAAGAAAACGCATTGGCAGCTAAAAAACGCGCACTTCAAGCGCGTGCTGAAA
AAGCAGAGCGTGAAGCCGCTGCCGAACGCAATAAATTGGCACAATTGGAAAAGGCAGAGAAAGCCATTGCCGAGCGTAAA
TCTGCCAAAAACAGCAAAGACAGCGTAAAAGACAAGGCCGAGCCTGCTAAGAAAGTAGAAGCCAAAGTTGAAAAACCAAA
AAATGAAAAGGCTAAACCAGAAACGGCCAAAGCAGAAAAAGCCGATAAGGTAAAAACTGCCGAGAAGCCGTCTGAAAAAG
CCAAACCTAAAGCTGAAAAAGAAACAGCAGAAGCCAAGCCTGCGAAAAAAGCCGCTATTCAGGCTGGTTATGCTGAAAAA
GAACGCGCGCAAAGCCTGCAACGTAAAATGAAAGCCGCAGGTATCGATTCGACCATTACTGAAGTCATGACCGATAAAGG
TAAGGTGTATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCAGAGCGCGATTTGAACAAATTGCGTGTACATG
GCATTGCCGGTCAGGTGACCAGTGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(309-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

48.731

100

0.503