Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RDV50_RS08820 Genome accession   NZ_CP133462
Coordinates   1841579..1842955 (-) Length   458 a.a.
NCBI ID   WP_137040988.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1836579..1847955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS08795 (RDV50_08795) - 1838451..1839068 (-) 618 WP_137040991.1 4'-phosphopantetheinyl transferase superfamily protein -
  RDV50_RS08800 (RDV50_08800) - 1839121..1839633 (-) 513 WP_003685285.1 hypothetical protein -
  RDV50_RS08810 (RDV50_08810) - 1840006..1840566 (+) 561 WP_137040990.1 pseudouridine synthase -
  RDV50_RS08815 (RDV50_08815) - 1840622..1841428 (-) 807 WP_137040989.1 DUF4198 domain-containing protein -
  RDV50_RS08820 (RDV50_08820) radA 1841579..1842955 (-) 1377 WP_137040988.1 DNA repair protein RadA Machinery gene
  RDV50_RS08825 (RDV50_08825) - 1843051..1844523 (-) 1473 WP_137040987.1 S41 family peptidase -
  RDV50_RS08830 (RDV50_08830) - 1844739..1846655 (-) 1917 WP_137040986.1 peptidoglycan DD-metalloendopeptidase family protein -
  RDV50_RS08835 (RDV50_08835) - 1846829..1847374 (+) 546 WP_137040985.1 CreA family protein -
  RDV50_RS08840 (RDV50_08840) - 1847402..1847950 (+) 549 WP_137040984.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49318.77 Da        Isoelectric Point: 7.0601

>NTDB_id=874399 RDV50_RS08820 WP_137040988.1 1841579..1842955(-) (radA) [Neisseria subflava strain LMG 5313]
MAKAPKTIYQCTECGGTSPKWQGKCTHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPIARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=874399 RDV50_RS08820 WP_137040988.1 1841579..1842955(-) (radA) [Neisseria subflava strain LMG 5313]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGCACCGAATGCGGTGGCACCTCCCCGAAATGGCAGGGCAAATGCACGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCGCCCGAACCGAAAAATGCCCGCTTCCAATCTTGGGCGGCGG
ATACTTCGACCGTCCAGTCCCTCTCCGCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGACGGTGCGGTTATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAAGAATCCGCCCAACAGGTCGCCC
TACGCGCGCAGCGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAGCATCAACCCGAAGTCGTCGTCATTGACTCCATCCAAACCATGTATTCCGACCAAATCACCTCCGCCCCCGG
CTCCGTGTCGCAGGTACGCGAATGTGCCGCCCAACTGACACGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGTGCCATCAAAAACCGTTTCGGCGCGGCAAACGAACTGGGCGTATTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATTTTCCTCGCCAGCTACCGCGACGACACGCCCGGCTCGT
GCGTTTTGGTTACACAAGAAGGCAGCCGCCCACTTTTGGTCGAAATTCAGGCATTGGTCGATGATGCACACGGTTTCACC
CCCAAACGACTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGACACGGCGGCATCGC
CTGCTTCGACCAAGACGTGTTCCTCAACGCCGTCGGCGGCGTCAAAATCGGCGAACCCGCCGCCGACCTTGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCGCTGCCCGAAAAAATGGTCGCATTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCATCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGTTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCAAACCTGAAAATCTACGGCGTCAGCAGTTTGCAGGAAGCGATTGACGTTT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.241

100

0.496
  radA Streptococcus mitis NCTC 12261

47.241

98.908

0.467
  radA Streptococcus pneumoniae Rx1

46.903

98.69

0.463
  radA Streptococcus pneumoniae D39

46.903

98.69

0.463
  radA Streptococcus pneumoniae R6

46.903

98.69

0.463
  radA Streptococcus pneumoniae TIGR4

46.903

98.69

0.463
  radA Streptococcus mitis SK321

46.785

98.472

0.461