Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   RDV50_RS05340 Genome accession   NZ_CP133462
Coordinates   1103544..1105076 (-) Length   510 a.a.
NCBI ID   WP_167480335.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1102144..1112358 1103544..1105076 within 0


Gene organization within MGE regions


Location: 1102144..1112358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS05335 (RDV50_05335) - 1102144..1103370 (+) 1227 WP_137041399.1 MFS transporter -
  RDV50_RS05340 (RDV50_05340) pilA 1103544..1105076 (-) 1533 WP_167480335.1 signal recognition particle-docking protein FtsY Machinery gene
  RDV50_RS05345 (RDV50_05345) msrAB 1105222..1106790 (+) 1569 WP_137041398.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  RDV50_RS05350 (RDV50_05350) purB 1106922..1108292 (-) 1371 WP_070749732.1 adenylosuccinate lyase -
  RDV50_RS05355 (RDV50_05355) - 1108503..1108943 (+) 441 WP_137041397.1 surface-adhesin E family protein -
  RDV50_RS05360 (RDV50_05360) - 1109329..1109898 (-) 570 WP_036473516.1 L-threonylcarbamoyladenylate synthase -
  RDV50_RS05365 (RDV50_05365) purD 1109970..1111241 (-) 1272 WP_107868142.1 phosphoribosylamine--glycine ligase -
  RDV50_RS05370 (RDV50_05370) - 1111381..1111692 (+) 312 WP_003686705.1 DUF4298 domain-containing protein -
  RDV50_RS05375 (RDV50_05375) - 1111747..1112358 (-) 612 WP_137041396.1 YigZ family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54597.51 Da        Isoelectric Point: 4.2178

>NTDB_id=874388 RDV50_RS05340 WP_167480335.1 1103544..1105076(-) (pilA) [Neisseria subflava strain LMG 5313]
MFSFFRRKKKQETPAPEEAQVQETAAKVESEVAQVVENIKEDAESLAESVKGHVESVVESAVETASETVEQVREALTETP
SETVEKIEEHVEAAKEAAVETVSETVEQVQETVAEMPSELAEAAEEAAEQAEAVKEAAVETVSEAVAQVQETVAEMPSEI
AEADEEAAEQAEAVKEAAVEAVSEAVEQVQEAVAETPAEASAPVEEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=874388 RDV50_RS05340 WP_167480335.1 1103544..1105076(-) (pilA) [Neisseria subflava strain LMG 5313]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCAGAAAGCGTCAAAGGGCATG
TTGAATCAGTTGTCGAATCGGCTGTTGAAACTGCCAGTGAAACCGTCGAACAGGTTCGGGAAGCTTTGACCGAAACGCCG
TCTGAAACAGTCGAAAAAATAGAAGAACACGTTGAAGCGGCAAAAGAAGCGGCTGTTGAAACCGTTAGCGAGACTGTTGA
ACAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAATTAGCCGAGGCTGCTGAGGAAGCAGCAGAACAGGCCGAAGCAG
TAAAAGAAGCGGCCGTTGAAACCGTCAGTGAGGCTGTTGCACAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAATA
GCCGAGGCTGATGAGGAAGCAGCAGAACAGGCCGAAGCGGTCAAAGAAGCAGCTGTTGAGGCAGTTAGCGAAGCTGTCGA
GCAAGTTCAAGAAGCCGTTGCGGAAACACCGGCTGAAGCCTCTGCTCCGGTAGAAGAACACAAGCTCAGTTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCACGCGACAAAATGGCAAAATCGTTGGCCGGCGTGTTTGGCGGCGGACAGATCGAC
GAGGATTTGTACGAAGAGCTGGAAACCGTGCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
TGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGACGGCAACGAATTGCGCGGTGCGCTGAAAGATGCGCTGTACGACT
TGATTAAGCCTCTGGAGAAGCCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGC
GCAGGCAAAACCACATCTATCGGCAAATTGGCCAAATACTTCCAAGCACAGGGCAAATCCGTGTTGTTGGCGGCAGGCGA
TACCTTCCGTGCCGCCGCGCGTGAGCAGCTTCAGGCTTGGGGCGAACGCAACAATGTGACCGTGATTTCGCAAACTACGG
GCGATTCCGCAGCCGTTTGCTTCGATGCCGTCCAAGCCGCGAAAGCGCGCGGGATCGACATCGTGCTTGCCGATACAGCC
GGCCGTCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATCGGGCAAAACGCCGTCAACCAAGTGAAAGCCTTTGACGAAGCGC
TGGGTCTGACCGGCCTGATCGTGACCAAGCTAGACGGTACGGCCAAAGGCGGTATCCTTGCCGCACTTGCTTCCGACCGC
CCAGTTCCTGTCCGCTACATCGGCGTAGGCGAAGGCATCGACGATTTGCGTCCGTTTAATGCCAAAGCGTTCGTAGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

74.51

100

0.745