Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   RDV50_RS02965 Genome accession   NZ_CP133462
Coordinates   613860..617159 (-) Length   1099 a.a.
NCBI ID   WP_137040269.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 608860..622159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS02940 (RDV50_02940) - 609186..609992 (+) 807 WP_137040273.1 integrase core domain-containing protein -
  RDV50_RS02945 (RDV50_02945) ilvE 610504..611502 (-) 999 WP_070632923.1 branched-chain-amino-acid transaminase -
  RDV50_RS02950 (RDV50_02950) - 611717..612040 (+) 324 WP_049328701.1 lipopolysaccharide assembly LapA domain-containing protein -
  RDV50_RS02955 (RDV50_02955) lapB 612066..613235 (+) 1170 WP_003745547.1 lipopolysaccharide assembly protein LapB -
  RDV50_RS02960 (RDV50_02960) - 613359..613856 (-) 498 WP_137040271.1 thioredoxin family protein -
  RDV50_RS02965 (RDV50_02965) recC 613860..617159 (-) 3300 WP_137040269.1 exodeoxyribonuclease V subunit gamma Machinery gene
  RDV50_RS02970 (RDV50_02970) - 617411..618286 (-) 876 WP_137040267.1 lysophospholipid acyltransferase family protein -
  RDV50_RS02975 (RDV50_02975) metK 618679..619848 (+) 1170 WP_137040265.1 methionine adenosyltransferase -
  RDV50_RS02980 (RDV50_02980) - 619958..620278 (+) 321 WP_049332041.1 accessory factor UbiK family protein -
  RDV50_RS02985 (RDV50_02985) comM 620292..621788 (+) 1497 WP_137040263.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 124989.50 Da        Isoelectric Point: 4.6336

>NTDB_id=874375 RDV50_RS02965 WP_137040269.1 613860..617159(-) (recC) [Neisseria subflava strain LMG 5313]
MFYLFQSDRLESLAEMCARIHQASPLDSVLAQEEVVVQSQGMRRYLNVFFARELGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEVFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEVGKDDTLLHCLQNDIQNLIMPSERL
YQQEESEAGAQSALVQVHDADGNPVYVEPDELLNDGSVKIVAAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIE
PYSPFIEAVFGQAHAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE
TVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWQ
APANVEGWVQRCRDLLEKLFAPDADDQYAKQQFEQSLARWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKYPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPQAEAQPFFLEALS
QEEPGKTIHQGELISFWRNPVKVWLKKNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDARRKGEDFEDTAIRLNAESL
MPVGELGGLWQKQYQISAKNVDAELIRSNKRPSEPYEEHFDDLVLQGTIGNLYECGRIVFLNQKDNAPNRIARLLEHLIF
CAVAPKSVANRQTYIVSLGQTETYAAIEQQTAKEFLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYNKKEDWDAALRKAHE
VFNGNKMSKGQKEYTEVKLVFGHSDESPLDEPLFENLVVNLLVPLLTSVAGKTDTTEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=874375 RDV50_RS02965 WP_137040269.1 613860..617159(-) (recC) [Neisseria subflava strain LMG 5313]
ATGTTTTATCTCTTTCAATCCGACCGTTTGGAATCGCTTGCCGAAATGTGCGCGCGTATTCATCAGGCTTCGCCCTTGGA
TTCTGTATTGGCGCAGGAAGAAGTGGTGGTGCAGAGCCAGGGGATGCGGCGTTATCTGAATGTGTTTTTCGCGCGTGAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCTGCCGGTTTGGCGTGGCAGCTGATGCGCAAATTGGTTCCCGATGTG
CCGCCCCTTAGTCCGTTTTCACCTGAAGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGCGAAGTGTTTCAGACGGC
CCCGGAATACGAAAACGTGCGCCTGAAGCTGGAAAGTTATTTGCACAGCTCGGCATCGGCGGATTATCAGCTTGCCGGAC
AGATGGCGGATATTTTCGACCAATATTTGGTGTACCGCCCGGATTGGATTGATGCGTGGCAGGCTGGGAAACTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCGCGGCTGTGGCGTTATTTGGACGATGGCAGCCAATCTGCGCCGCACCGCGTGGC
CTTGTGGGAAAAGCTGTTGGCGCAGTTGGATAAATCAGTCTTGCCGCAAAGGTTGTTTGTATTCGGCATTTCGACAATGG
CGCCGATGTATCTGCAACTGCTGCACCAAATTTCCAAGCATTGCGATGTGTTTGTGTTCGCACTCAACCCGAGCAGCCAA
TATTGGGGCGAGGTCATCGACGAGGCGCAGATTTTGAAAAGGGGCGATGAGGCGGATTTGTCGCAGGCAGGGCATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGGCGCGATTTCTTTGATTTTCTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGTGGGAAAAGATGATACCTTGTTGCATTGCCTGCAAAACGATATCCAAAACTTAATCATGCCGTCTGAACGCTTA
TATCAACAGGAAGAAAGCGAAGCAGGCGCGCAATCGGCTTTGGTTCAAGTCCACGATGCGGACGGCAATCCGGTGTATGT
CGAGCCGGACGAGCTGCTGAATGACGGTTCCGTCAAAATCGTTGCAGCACACAGCCCTTTGCGCGAATTGCAGATTTTGA
AAGAAGAGCTGTCGCTGGTGTTGCAAAATAATCCCGATTGGCAGCCGCACGATATTGCCGTGTTGACACCGAACATCGAG
CCGTACAGCCCGTTTATCGAAGCCGTTTTTGGACAGGCGCACGCAGGCAGCCAGGCTTTGCCGTATTCGATTTCGGATGT
GAAACTCAGCCGCCGTCAGCCGTTACTGTATGCTTTGGCGCAAACTTTGGACTTGCTGGAAAGCCGGTTTGAAGTGGATA
AGGTTTTGCCCTTGCTGGAAAGCCGGTTGGTACTGCAACGTTTCGGTTTGAGCGAGGAAGATGTGCCGCTGCTGCATGAG
ACTGTTGCCGGATTGAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGCAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCTTTGGGCTGGATGCTGCCCGAAGGCGGCAACGGTATGTGGCAGGGCGTGAGCGCGTGGCATA
GCAACGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCCGCACTTTGGCCGATATGGCGGCACAATGGCAA
GCGCCTGCCAATGTGGAAGGCTGGGTGCAGCGTTGCCGCGATTTGCTGGAGAAACTGTTTGCTCCGGATGCGGACGATCA
ATACGCCAAGCAGCAGTTTGAGCAGTCTTTAGCGAGATGGCAGGAAGAGGCGCAGTTGGCCGAATTTGACGGATTGTTGC
CGTGTAAAACCGTTATCCGCCATATCCGCCGCTTTTTGGACAGCGAAAGCCAAGCCGGATTTTTGAGCGGCGGTATCACT
TTTTGCAGTATGGTGCCGATGCGCAGCTTGCCGTTTAAAATGGTTTGCCTGTTGGGTTTGAATGACGGCGATTTTCCGCG
CAATACCAAAGCGGCGGTGTTCGACCTGATTGCCAAATATCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGTT
ATCTCTTCCTGGAAGCCTTAATCAGCGCGCGCGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCC
GAGTTCGCGCCGTCTTCGTTAATCAGCGAGCTGCTGGATACCATTGCCGCCATGACGGGGAAAAGCGGGCGCGAGTTGTC
GGAGAAATGGGTGAAACATCATCCGTTGCAGGCGTTCTCACGCCGTTATTTCCAAAAGGACGCGCTTTCAGACGGCCTCT
TCAGTACGCGCCAAGATTACGCCGATGCGTTGAACCAACCGCAAGCGGAAGCGCAGCCGTTTTTCCTTGAGGCTTTAAGT
CAGGAAGAGCCGGGTAAAACCATTCATCAGGGCGAGCTTATCAGTTTTTGGCGTAACCCTGTCAAAGTTTGGCTGAAGAA
AAATTTAAGCTGGGATCAGCCGTATCTGGACGGCGCATGGGAGTCTGCCGAACCGTTTGAGCCGCAACATGAGGGTCGGA
TTGCCGATGCCTATTTGGATGCGCGGCGCAAAGGGGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCCGAAAGCCTA
ATGCCGGTGGGCGAGTTGGGCGGTTTATGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTAGATGCCGAGCTGATACG
CAGTAACAAAAGGCCGTCTGAACCTTATGAAGAACACTTTGACGACTTGGTTTTACAAGGCACCATCGGTAATCTTTATG
AATGCGGCCGCATTGTGTTCCTAAATCAAAAAGACAATGCCCCCAACCGCATTGCCCGTTTATTGGAGCATTTGATTTTT
TGCGCCGTCGCCCCTAAATCCGTTGCAAACCGACAAACCTATATTGTCAGCTTGGGGCAGACCGAAACCTATGCCGCCAT
CGAGCAACAAACAGCAAAAGAATTTTTGAAAGAATGGTTAGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTT
TTGCCAAAACCAGTCTTGCCGCTGCGGAGGAGTACAACAAAAAAGAGGATTGGGATGCTGCCTTGAGAAAAGCCCATGAG
GTTTTTAACGGCAATAAAATGAGCAAAGGGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTTGGCCATTCGGACGAATC
GCCGCTTGATGAGCCGCTATTTGAAAACCTCGTCGTCAATCTGCTCGTTCCGCTTTTGACCAGCGTGGCAGGGAAGACCG
ATACAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(807-1024)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.201

99.636

0.64