Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RDV50_RS02220 Genome accession   NZ_CP133462
Coordinates   460083..460544 (+) Length   153 a.a.
NCBI ID   WP_137040448.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 455083..465544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS02195 (RDV50_02195) - 455185..455853 (-) 669 WP_137040452.1 DUF3108 domain-containing protein -
  RDV50_RS02200 (RDV50_02200) purN 455884..456510 (-) 627 WP_049344053.1 phosphoribosylglycinamide formyltransferase -
  RDV50_RS02205 (RDV50_02205) - 456607..457422 (-) 816 WP_308862484.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RDV50_RS02210 (RDV50_02210) - 457583..458848 (-) 1266 WP_003685975.1 Glu/Leu/Phe/Val dehydrogenase -
  RDV50_RS02215 (RDV50_02215) - 459269..459982 (+) 714 WP_049329866.1 phosphoglycolate phosphatase -
  RDV50_RS02220 (RDV50_02220) recX 460083..460544 (+) 462 WP_137040448.1 recombination regulator RecX Regulator
  RDV50_RS02225 (RDV50_02225) - 460620..460781 (+) 162 WP_003686014.1 hypothetical protein -
  RDV50_RS02230 (RDV50_02230) - 460901..463057 (-) 2157 WP_308862481.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RDV50_RS02235 (RDV50_02235) rpoZ 463162..463368 (-) 207 WP_070631367.1 DNA-directed RNA polymerase subunit omega -
  RDV50_RS02240 (RDV50_02240) gmk 463421..464038 (-) 618 WP_003686079.1 guanylate kinase -
  RDV50_RS02245 (RDV50_02245) - 464207..464767 (+) 561 WP_137040446.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17920.12 Da        Isoelectric Point: 8.0020

>NTDB_id=874373 RDV50_RS02220 WP_137040448.1 460083..460544(+) (recX) [Neisseria subflava strain LMG 5313]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGINADDCREFLPDREDELQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGSDTIQTALKTAWNEDEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=874373 RDV50_RS02220 WP_137040448.1 460083..460544(+) (recX) [Neisseria subflava strain LMG 5313]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCCCGTCAGGAAGTCAGCCGTGTTGGATTGAAACG
CAAACTGGCCCCACACGCTGAAAGTGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCAGAAGCCTATATTCACAGCAAGAGCAACCGTTATGGCACGCTCCGCCTCAAGCAAGCCTTGGCGCAA
CAAGGTATCAATGCAGACGACTGTCGGGAGTTCTTACCCGATAGGGAAGACGAGCTGCAAACCGCCATTTCCGTCTTGCG
TAAAAAATTCAAGCAAGAAGCTCAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCCTATCGCGGCTTTGGCT
CCGACACCATTCAGACGGCCTTAAAAACCGCGTGGAATGAAGACGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

77.027

96.732

0.745