Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   RDV50_RS02175 Genome accession   NZ_CP133462
Coordinates   450543..452582 (-) Length   679 a.a.
NCBI ID   WP_137040454.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 445543..457582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS02165 (RDV50_02165) - 447927..448721 (-) 795 WP_137040456.1 thymidylate synthase -
  RDV50_RS02170 (RDV50_02170) gdhA 449137..450471 (+) 1335 WP_070584291.1 NADP-specific glutamate dehydrogenase -
  RDV50_RS02175 (RDV50_02175) recG 450543..452582 (-) 2040 WP_137040454.1 ATP-dependent DNA helicase RecG Machinery gene
  RDV50_RS02180 (RDV50_02180) secB 452683..453117 (-) 435 WP_003684095.1 protein-export chaperone SecB -
  RDV50_RS02185 (RDV50_02185) grxC 453139..453396 (-) 258 WP_049329930.1 glutaredoxin 3 -
  RDV50_RS02190 (RDV50_02190) - 453634..455127 (+) 1494 WP_107858142.1 Rne/Rng family ribonuclease -
  RDV50_RS02195 (RDV50_02195) - 455185..455853 (-) 669 WP_137040452.1 DUF3108 domain-containing protein -
  RDV50_RS02200 (RDV50_02200) purN 455884..456510 (-) 627 WP_049344053.1 phosphoribosylglycinamide formyltransferase -
  RDV50_RS02205 (RDV50_02205) - 456607..457422 (-) 816 WP_308862484.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75065.90 Da        Isoelectric Point: 7.1646

>NTDB_id=874372 RDV50_RS02175 WP_137040454.1 450543..452582(-) (recG) [Neisseria subflava strain LMG 5313]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEMIHPKIRDAESSGLAESLTPVYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAA
ALGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALNAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRFA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATKTLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLARWLASREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=874372 RDV50_RS02175 WP_137040454.1 450543..452582(-) (recG) [Neisseria subflava strain LMG 5313]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGAAAAACTCAACCTCCATACCGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTATGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCGATCGGTG
TGCCGTGTCAGGTTGAGGGCGAAGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTGATTGTCCAAATCGCC
GACGGTTCCGGTAGTGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCCATCAGAAACAGATGGCGGCCGGCAAACG
CATCCGCGCCGTGGGCGAAATCAAACACGGGTTTTACGGCGACGAGATGATTCATCCCAAAATCCGTGATGCCGAGAGCA
GCGGTTTGGCGGAAAGCCTCACGCCCGTCTATCCGACCGTAAACGGCTTGAACCAGCCCACTTTGCGCCGCATCATTCAA
ACGGCGTTGGACGTTACGCCGCTGCACGACACGCTCCCCGATGCCTTATTGGGTCGTCTGAAACTGCCGCACCTCGCCGA
AAGCCTGCGCCTTTTGCATTCGCCGCCGCCGAGTTTCACCATCCACCAGCTTTCCGACGGCGCGCTTCCCGCATGGCAGC
GGCTCAAATTCGACGAACTTTTGGCGCAACAGTTGTCCATGCGGCTGGCGCGACAGAAGCGTGTCAGCGGCACGGCGGCG
GCATTGGGCGGCGACGGCACGCTGACCCAAGCCCTGCGCCACGCCTTGCCGTTTGCCCTGACCGATGCCCAAGAACGAGT
CGTGTCCGAAATCCGCCGCGACATGGCGCAAACCCATCCTATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATTGTTGCTGCCTTGTCTGCTTTGAATGCCATTGAATCCGGTGCGCAGGTGGCTGTAATGGCGCCGACCGAAATCCTT
GCCGAACAGCATTTCATCAAGTTCAAACAATGGCTCGAACCTTTAGGACTCGAAGTCGTCTGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCACCGTCAAAATCGCCGTCGGTACGCACGCCCTGTTTT
CAGACGACGTCGAGTTTCAAAATTTAGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGCGTCGCCCAACGCTTCGCC
CTCAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACGCCCATTCCGCGTACGCTTGCCATGAGTTTTTT
CGCCGACTTAGACGTGTCTGTTATCGACGAATTGCCGCCCGGGCGCACCCCGATTAAGACTCGCCTCGTCAACAACGTCC
GCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCTACCAAAACCCTCGAGCAGCTTCAGGCGGCATTGCCCGAACTCAACATCGG
CTTGGTACACGGGCGCATGAAAGCCGCTGAAAAAGCCGAAGTCATGGCGGAGTTTGCCGCAGGCCGTCTGAACGTCTTGG
TTGCCACCACCGTTATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGGCGGGTAGGGCGCGGCGCGGCGGAAAGCGTGTGCGTCCTCCTGTTTGCCGAACC
CTTGAGCGAACTCGCCAAAGCGCGGCTGAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTCGGCGCACGCCAAAGCGGCGTCCCCATGCTGCGTTTCGCCAACCTCGAAGAAGAC
CTGCACCTCTTGGAACAGGCGCGCGAAATCGCCCCCTTGTTGATTGAGCAAAACCCCGAAATCGTCGAAGCGCATCTGGC
AAGGTGGCTTGCCAGCAGGGAAGGGTATTTGGGTGTATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(261-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

RecG wedge domain (RecG_wedge)

(14-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.373

100

0.934