Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WJ054_RS09880 Genome accession   NZ_CP149485
Coordinates   2001041..2002402 (-) Length   453 a.a.
NCBI ID   WP_110408183.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain STG643     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996041..2007402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ054_RS09855 (WJ054_09840) - 1996762..1998030 (-) 1269 WP_003060892.1 MFS transporter -
  WJ054_RS09860 (WJ054_09845) - 1998125..1998826 (-) 702 WP_003053382.1 hypothetical protein -
  WJ054_RS09865 (WJ054_09850) - 1998830..1999276 (-) 447 WP_003053367.1 LytTR family DNA-binding domain-containing protein -
  WJ054_RS09870 (WJ054_09855) - 1999505..2000221 (-) 717 WP_015058072.1 TIGR00266 family protein -
  WJ054_RS09875 (WJ054_09860) - 2000357..2000851 (-) 495 WP_003053380.1 carbonic anhydrase -
  WJ054_RS09880 (WJ054_09865) radA 2001041..2002402 (-) 1362 WP_110408183.1 DNA repair protein RadA Machinery gene
  WJ054_RS09885 (WJ054_09870) - 2002485..2002931 (-) 447 WP_003053378.1 dUTP diphosphatase -
  WJ054_RS09890 (WJ054_09875) - 2003039..2003806 (-) 768 WP_014612596.1 epoxyqueuosine reductase QueH -
  WJ054_RS09895 (WJ054_09880) - 2003926..2005710 (-) 1785 WP_084916675.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49309.58 Da        Isoelectric Point: 6.0944

>NTDB_id=874362 WJ054_RS09880 WP_110408183.1 2001041..2002402(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIISPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=874362 WJ054_RS09880 WP_110408183.1 2001041..2002402(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCTACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTTCGGA
GTGAGCGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTCTTGATTATTGATTCTATCCAAACCATTATAAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTTACTGCAGAATTGATGCAGCTTGCAAAGACGAACAACATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATTGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCCATTGATTTAGCTGTAGCCGTAGCCA
TCGCATCCAGTTATAAAGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGAATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(57-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.313

100

0.863
  radA Streptococcus pneumoniae Rx1

86.093

100

0.861
  radA Streptococcus pneumoniae D39

86.093

100

0.861
  radA Streptococcus pneumoniae R6

86.093

100

0.861
  radA Streptococcus pneumoniae TIGR4

86.093

100

0.861
  radA Streptococcus mitis SK321

86.093

100

0.861
  radA/sms Bacillus subtilis subsp. subtilis str. 168

61.707

100

0.623