Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HSX42_RS17520 Genome accession   NZ_CP133461
Coordinates   3398290..3398637 (-) Length   115 a.a.
NCBI ID   WP_008880386.1    Uniprot ID   A4IT00
Organism   Geobacillus thermodenitrificans strain K1041     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3393290..3403637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSX42_RS17495 (HSX42_17495) wecB 3393502..3394647 (-) 1146 WP_008880382.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  HSX42_RS17500 (HSX42_17500) - 3394843..3396180 (-) 1338 Protein_3384 peptidoglycan-binding protein -
  HSX42_RS17505 (HSX42_17505) - 3396247..3396819 (-) 573 Protein_3385 peptidoglycan-binding protein -
  HSX42_RS17510 (HSX42_17510) - 3397036..3397536 (-) 501 WP_008880384.1 hypothetical protein -
  HSX42_RS17515 (HSX42_17515) - 3397750..3398160 (+) 411 WP_029761384.1 helix-turn-helix domain-containing protein -
  HSX42_RS17520 (HSX42_17520) ssbB 3398290..3398637 (-) 348 WP_008880386.1 single-stranded DNA-binding protein Machinery gene
  HSX42_RS17525 (HSX42_17525) - 3398921..3399361 (+) 441 WP_008880387.1 YwpF-like family protein -
  HSX42_RS17530 (HSX42_17530) - 3399548..3400219 (-) 672 WP_008880388.1 class D sortase -
  HSX42_RS17535 (HSX42_17535) - 3400226..3401194 (-) 969 WP_050772203.1 processed acidic surface protein -
  HSX42_RS17540 (HSX42_17540) - 3401304..3402680 (-) 1377 WP_011888254.1 aspartate kinase -
  HSX42_RS17545 (HSX42_17545) - 3402831..3403265 (-) 435 WP_008880391.1 DUF1284 domain-containing protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12957.77 Da        Isoelectric Point: 8.5040

>NTDB_id=874362 HSX42_RS17520 WP_008880386.1 3398290..3398637(-) (ssbB) [Geobacillus thermodenitrificans strain K1041]
MINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNAEGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGRIQTR
RYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV

Nucleotide


Download         Length: 348 bp        

>NTDB_id=874362 HSX42_RS17520 WP_008880386.1 3398290..3398637(-) (ssbB) [Geobacillus thermodenitrificans strain K1041]
ATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAAGGGACGGCCGTTAC
AACCGTGATCTTGGCGGTAGCAAGAAATTTTCGCAACGCGGAAGGGGGGATTGATGCTGACTTCGTTCCGTGTGTCCTAT
GGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGAATCCAGACGCGC
CGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCTCCACTCCGGCAA
AGTGCGAGAATGGCCGGAGCACGTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4IT00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.273

95.652

0.643
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

90.435

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

60.952

91.304

0.557
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.368

99.13

0.47
  ssbA Streptococcus mutans UA159

44.737

99.13

0.443
  ssbB/cilA Streptococcus mitis NCTC 12261

43.86

99.13

0.435
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.86

99.13

0.435
  ssbB/cilA Streptococcus mitis SK321

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae D39

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae R6

42.982

99.13

0.426
  ssbB Lactococcus lactis subsp. cremoris KW2

41.346

90.435

0.374