Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ83_RS18005 Genome accession   NZ_AP027563
Coordinates   3702228..3702743 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LR-58-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3697228..3707743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ83_RS17980 (VEE04_34210) ygaZ 3697627..3698364 (+) 738 WP_000445659.1 L-valine exporter subunit YgaZ -
  AABJ83_RS17985 (VEE04_34220) ygaH 3698354..3698689 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  AABJ83_RS17990 (VEE04_34230) emrR 3698780..3699310 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABJ83_RS17995 (VEE04_34240) emrA 3699437..3700609 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABJ83_RS18000 (VEE04_34250) emrB 3700626..3702164 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ83_RS18005 (VEE04_34260) luxS 3702228..3702743 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ83_RS18010 (VEE04_34270) gshA 3702893..3704449 (-) 1557 WP_000611791.1 glutamate--cysteine ligase -
  AABJ83_RS18015 (VEE04_34280) yqaA 3704522..3704950 (-) 429 WP_001287454.1 YqaA family protein -
  AABJ83_RS18020 (VEE04_34290) yqaB 3704947..3705513 (-) 567 WP_000273303.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ83_RS18050 (VEE04_34300) csrA 3707105..3707290 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=87435 AABJ83_RS18005 WP_001130211.1 3702228..3702743(-) (luxS) [Escherichia coli strain LR-58-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=87435 AABJ83_RS18005 WP_001130211.1 3702228..3702743(-) (luxS) [Escherichia coli strain LR-58-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment