Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | HSX42_RS13870 | Genome accession | NZ_CP133461 |
| Coordinates | 2688836..2689906 (-) | Length | 356 a.a. |
| NCBI ID | WP_029760727.1 | Uniprot ID | - |
| Organism | Geobacillus thermodenitrificans strain K1041 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2683836..2694906
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HSX42_RS13840 (HSX42_13840) | - | 2684499..2684696 (-) | 198 | WP_029760733.1 | hypothetical protein | - |
| HSX42_RS13845 (HSX42_13845) | - | 2684755..2685003 (-) | 249 | WP_029760732.1 | helix-turn-helix domain-containing protein | - |
| HSX42_RS13850 (HSX42_13850) | - | 2685238..2685672 (+) | 435 | WP_029760731.1 | helix-turn-helix domain-containing protein | - |
| HSX42_RS13855 (HSX42_13855) | - | 2685695..2686144 (+) | 450 | WP_029760730.1 | ImmA/IrrE family metallo-endopeptidase | - |
| HSX42_RS13860 (HSX42_13860) | - | 2686161..2687690 (+) | 1530 | WP_029760729.1 | recombinase family protein | - |
| HSX42_RS13865 (HSX42_13865) | comGB | 2687811..2688839 (-) | 1029 | WP_099233351.1 | competence type IV pilus assembly protein ComGB | - |
| HSX42_RS13870 (HSX42_13870) | comGA | 2688836..2689906 (-) | 1071 | WP_029760727.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| HSX42_RS13875 (HSX42_13875) | - | 2690106..2690804 (+) | 699 | WP_008879853.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HSX42_RS13880 (HSX42_13880) | - | 2690968..2691210 (+) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| HSX42_RS13885 (HSX42_13885) | - | 2691241..2692368 (-) | 1128 | WP_087960149.1 | class I SAM-dependent methyltransferase | - |
| HSX42_RS13890 (HSX42_13890) | - | 2692600..2693232 (-) | 633 | WP_008879856.1 | MBL fold metallo-hydrolase | - |
| HSX42_RS13895 (HSX42_13895) | - | 2693412..2693588 (+) | 177 | WP_008879857.1 | DUF2759 domain-containing protein | - |
| HSX42_RS13900 (HSX42_13900) | - | 2693624..2694787 (-) | 1164 | WP_008879858.1 | M14 family metallocarboxypeptidase | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 39595.73 Da Isoelectric Point: 8.6314
>NTDB_id=874348 HSX42_RS13870 WP_029760727.1 2688836..2689906(-) (comGA) [Geobacillus thermodenitrificans strain K1041]
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALFDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALFDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
Nucleotide
Download Length: 1071 bp
>NTDB_id=874348 HSX42_RS13870 WP_029760727.1 2688836..2689906(-) (comGA) [Geobacillus thermodenitrificans strain K1041]
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGCATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCCACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAGCGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGTTGCTTTACGGCTCAGCGCTCTTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCGCATCTGACATTAGCACGTCTTATCCGCAAAGGAATCGCGCTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGCATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCCACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAGCGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGTTGCTTTACGGCTCAGCGCTCTTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCGCATCTGACATTAGCACGTCTTATCCGCAAAGGAATCGCGCTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
51.585 |
97.472 |
0.503 |
| pilB | Glaesserella parasuis strain SC1401 |
37.83 |
95.787 |
0.362 |