Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   WJ054_RS08645 Genome accession   NZ_CP149485
Coordinates   1745095..1746129 (-) Length   344 a.a.
NCBI ID   WP_015017341.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain STG643     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740095..1751129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ054_RS08610 (WJ054_08590) - 1740720..1741022 (-) 303 WP_003052320.1 YlxQ-related RNA-binding protein -
  WJ054_RS08615 (WJ054_08595) rnpM 1741015..1741311 (-) 297 WP_003062190.1 RNase P modulator RnpM -
  WJ054_RS08620 (WJ054_08600) nusA 1741327..1742484 (-) 1158 WP_003057051.1 transcription termination factor NusA -
  WJ054_RS08625 (WJ054_08605) rimP 1742627..1743109 (-) 483 WP_155778083.1 ribosome maturation factor RimP -
  WJ054_RS08635 (WJ054_08615) trmB 1743604..1744239 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  WJ054_RS08640 (WJ054_08620) ccrZ 1744239..1745030 (-) 792 WP_003052472.1 cell cycle regulator CcrZ -
  WJ054_RS08645 (WJ054_08625) pptB 1745095..1746129 (-) 1035 WP_015017341.1 ABC transporter permease Regulator
  WJ054_RS08650 (WJ054_08630) pptA 1746132..1746857 (-) 726 WP_003057032.1 ABC transporter ATP-binding protein Regulator
  WJ054_RS08655 (WJ054_08635) - 1746929..1747348 (+) 420 WP_012767493.1 HIT family protein -
  WJ054_RS08660 (WJ054_08640) - 1747345..1747674 (+) 330 WP_003057072.1 hypothetical protein -
  WJ054_RS08665 (WJ054_08645) brpA 1747832..1749100 (-) 1269 WP_015058007.1 biofilm formation/cell division transcriptional regulator BrpA -
  WJ054_RS08670 (WJ054_08650) - 1749112..1749633 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  WJ054_RS08675 (WJ054_08655) tsaE 1749626..1750069 (-) 444 WP_115283587.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40194.42 Da        Isoelectric Point: 10.2471

>NTDB_id=874348 WJ054_RS08645 WP_015017341.1 1745095..1746129(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIWGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRHFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVAVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=874348 WJ054_RS08645 WP_015017341.1 1745095..1746129(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCTATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAACGCTCTGCCCTTGTAAT
TTGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCTTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACACTTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCTTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGCGGTCATGGGAGTTATTACGCTTTTCTACCTCCCTTATAAGTTGAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(156-327)

Bacterial ABC transporter protein EcsB (EcsB)

(2-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.802

100

0.468
  pptB Streptococcus salivarius strain HSISS4

46.512

100

0.465