Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   WJ054_RS07460 Genome accession   NZ_CP149485
Coordinates   1492112..1493773 (-) Length   553 a.a.
NCBI ID   WP_084916344.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain STG643     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1487112..1498773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ054_RS07435 (WJ054_07405) - 1488155..1488430 (-) 276 WP_003044261.1 HU family DNA-binding protein -
  WJ054_RS07440 (WJ054_07410) - 1488529..1489116 (-) 588 WP_003053329.1 YpmS family protein -
  WJ054_RS07445 (WJ054_07415) - 1489094..1489936 (-) 843 WP_084916347.1 SGNH/GDSL hydrolase family protein -
  WJ054_RS07450 (WJ054_07420) - 1489929..1490768 (-) 840 WP_111679499.1 DegV family protein -
  WJ054_RS07455 (WJ054_07425) - 1491009..1491905 (-) 897 WP_022554955.1 LPXTG cell wall anchor domain-containing protein -
  WJ054_RS07460 (WJ054_07430) recN 1492112..1493773 (-) 1662 WP_084916344.1 DNA repair protein RecN Machinery gene
  WJ054_RS07465 (WJ054_07435) - 1493792..1494262 (-) 471 WP_003056949.1 arginine repressor -
  WJ054_RS07470 (WJ054_07440) - 1494249..1495076 (-) 828 WP_084916342.1 TlyA family RNA methyltransferase -
  WJ054_RS07475 (WJ054_07445) - 1495069..1495941 (-) 873 WP_084916341.1 polyprenyl synthetase family protein -
  WJ054_RS07480 (WJ054_07450) - 1495941..1496156 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  WJ054_RS07485 (WJ054_07455) xseA 1496134..1497474 (-) 1341 WP_084916340.1 exodeoxyribonuclease VII large subunit -
  WJ054_RS07490 (WJ054_07460) - 1497625..1498470 (-) 846 WP_003056961.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62229.42 Da        Isoelectric Point: 4.5949

>NTDB_id=874337 WJ054_RS07460 WP_084916344.1 1492112..1493773(-) (recN) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
MLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEVAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEVEFRLDTLNSLTRKYGGNV
NDVLDYYDNIVKEYQLLTGDELSSGDLEAELKALEKQLVAAASELSVSRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTSEERVEEIARMLAGADMTEAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=874337 WJ054_RS07460 WP_084916344.1 1492112..1493773(-) (recN) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
ATGCTATTAGAAATTTCCATTAAAAATTTTGCCATTATTGAGGAAATCTCTCTGAATTTTGAAAATGGCATGACAGTTTT
GACAGGTGAAACAGGAGCTGGAAAGTCCATTATTATTGATGCCATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGGGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGTTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGCCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAATACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAGTTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATCGTCAAAGAATACCAGCTATTAACAGGCGATGAGTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCTGCTTCGGAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCTCAAGCCATTGCCCAAAAGATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTCATTGCCATCGCTGATTACCAGTATTTTATTTCTAAAGA
GAGTAAAGAAGAGTCCACTGTTTCGAAGGTAAGGTTGTTAACTTCTGAAGAACGTGTGGAAGAAATTGCCAGAATGCTTG
CTGGTGCAGACATGACAGAAGCTGCTCTCACTCAGGCTCGTGAATTACTGGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.662

100

0.448