Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   WJ054_RS07305 Genome accession   NZ_CP149485
Coordinates   1460363..1461025 (-) Length   220 a.a.
NCBI ID   WP_003057999.1    Uniprot ID   A0ABU0A4Z4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain STG643     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455363..1466025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ054_RS07290 (WJ054_07260) sodA 1456317..1456922 (-) 606 WP_014612432.1 superoxide dismutase SodA -
  WJ054_RS07295 (WJ054_07265) holA 1457012..1458058 (-) 1047 WP_015017201.1 DNA polymerase III subunit delta -
  WJ054_RS07300 (WJ054_07270) comEC/celB 1458139..1460382 (-) 2244 WP_084916495.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WJ054_RS07305 (WJ054_07275) comEA 1460363..1461025 (-) 663 WP_003057999.1 helix-hairpin-helix domain-containing protein Machinery gene
  WJ054_RS07310 (WJ054_07280) - 1461422..1462162 (-) 741 WP_022554937.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  WJ054_RS07315 (WJ054_07285) - 1462280..1463056 (+) 777 WP_406848781.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  WJ054_RS07320 (WJ054_07290) - 1463046..1463324 (+) 279 WP_003061674.1 GIY-YIG nuclease family protein -
  WJ054_RS07325 (WJ054_07295) - 1463348..1465348 (-) 2001 WP_084916492.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24080.46 Da        Isoelectric Point: 5.8872

>NTDB_id=874334 WJ054_RS07305 WP_003057999.1 1460363..1461025(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
MIDDLLTKGTNSLKKVYSLPRLIGVVLAIFLILTLSFVIWGKEQSQTKLPIVSTSSSIQQPASEEKKYSSEESNILVDLK
GAVQQEGVYKLRANSRVRDVIELAGGLTQEADRHAVNFAEKLVDEQVVYVAKQGEDISVLPNASSAGKANAEMSNSTKVN
INKANLEELQRISGIGVKRAQDILETRDSLGGFKTLDDLRQVSGIGEKTLEKLKHELSLD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=874334 WJ054_RS07305 WP_003057999.1 1460363..1461025(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
ATGATAGATGACTTGTTAACTAAAGGAACAAATAGCTTGAAAAAGGTTTATTCTCTGCCACGCTTGATTGGTGTTGTGCT
AGCCATTTTTCTGATACTAACCCTAAGTTTTGTTATCTGGGGAAAAGAGCAGAGCCAAACAAAACTTCCTATTGTATCAA
CTTCTTCTTCCATACAACAGCCAGCTAGTGAGGAAAAAAAGTATTCTTCAGAAGAGAGTAATATTTTAGTGGATTTAAAA
GGAGCCGTACAACAGGAGGGAGTTTATAAGCTCAGGGCTAATAGCCGTGTGCGCGATGTCATTGAATTAGCTGGGGGACT
TACTCAGGAAGCTGATAGACATGCTGTTAATTTTGCAGAAAAACTGGTGGATGAGCAGGTTGTGTATGTGGCTAAGCAGG
GTGAAGACATTTCTGTCTTGCCAAATGCCTCCTCAGCAGGTAAAGCTAACGCAGAAATGTCTAACTCAACAAAGGTGAAT
ATCAATAAAGCAAATTTAGAGGAGTTACAACGTATTTCGGGCATTGGTGTAAAAAGGGCTCAGGATATTCTTGAGACGAG
AGACAGTCTAGGTGGCTTTAAAACGTTAGATGATCTTAGACAGGTATCTGGAATTGGTGAAAAAACACTTGAGAAATTGA
AACATGAACTATCGTTGGACTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-129)

Helix-hairpin-helix motif (HHH_3)

(155-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

38.389

95.909

0.368