Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WJ054_RS00270 Genome accession   NZ_CP149485
Coordinates   35167..35931 (+) Length   254 a.a.
NCBI ID   WP_406848802.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain STG643     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 30167..40931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ054_RS00260 (WJ054_00260) pcsB 32624..33826 (+) 1203 WP_084916630.1 peptidoglycan hydrolase PcsB -
  WJ054_RS00265 (WJ054_00265) - 33980..34942 (+) 963 WP_003049033.1 ribose-phosphate diphosphokinase -
  WJ054_RS00270 (WJ054_00270) recO 35167..35931 (+) 765 WP_406848802.1 DNA repair protein RecO Machinery gene
  WJ054_RS00275 (WJ054_00275) plsX 36038..37045 (+) 1008 WP_015016512.1 phosphate acyltransferase PlsX -
  WJ054_RS00280 (WJ054_00280) - 37038..37280 (+) 243 WP_003056449.1 phosphopantetheine-binding protein -
  WJ054_RS00285 (WJ054_00285) purC 37445..38155 (+) 711 WP_012766410.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30049.23 Da        Isoelectric Point: 5.7481

>NTDB_id=874269 WJ054_RS00270 WP_406848802.1 35167..35931(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVFYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=874269 WJ054_RS00270 WP_406848802.1 35167..35931(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGACAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATCAGGACCTTTTTCGACTTTCCTATGCAAGTTATGTAGTGGCTTTGGCAGATGCCGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTCTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTGTGCCCTGAACATTATCATAAAGATGACTACCGGAATCATCTAGA
TCCTAATGTCTTCTATTTACTAGACCGTTTTCAAACCATTCAGTTTGATGAATTGAGAACCATTTCTTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAATTGTATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.821

96.85

0.618