Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RDU00_RS14000 Genome accession   NZ_CP133449
Coordinates   2619952..2620698 (-) Length   248 a.a.
NCBI ID   WP_010886586.1    Uniprot ID   A0AAE2SM29
Organism   Bacillus subtilis strain KK195     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2614952..2625698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS13975 (RDU00_13975) mreC 2615358..2616230 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  RDU00_RS13980 (RDU00_13980) mreB 2616261..2617274 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  RDU00_RS13985 (RDU00_13985) radC 2617366..2618061 (-) 696 WP_003246034.1 RadC family protein -
  RDU00_RS13990 (RDU00_13990) maf 2618098..2618667 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  RDU00_RS13995 (RDU00_13995) spoIIB 2618820..2619818 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  RDU00_RS14000 (RDU00_14000) comC 2619952..2620698 (-) 747 WP_010886586.1 prepilin peptidase Machinery gene
  RDU00_RS14005 (RDU00_14005) folC 2620838..2622130 (-) 1293 WP_003229640.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  RDU00_RS14010 (RDU00_14010) valS 2622190..2624832 (-) 2643 WP_004398606.1 valine--tRNA ligase -
  RDU00_RS14015 (RDU00_14015) - 2625280..2625471 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26435.04 Da        Isoelectric Point: 9.7944

>NTDB_id=874233 RDU00_RS14000 WP_010886586.1 2619952..2620698(-) (comC) [Bacillus subtilis strain KK195]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=874233 RDU00_RS14000 WP_010886586.1 2619952..2620698(-) (comC) [Bacillus subtilis strain KK195]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

100

100

1