Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RDU00_RS12245 Genome accession   NZ_CP133449
Coordinates   2318639..2319442 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain KK195     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2313639..2324442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS12220 (RDU00_12220) glpQB 2314785..2315516 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  RDU00_RS12225 (RDU00_12225) yqiI 2315595..2316215 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  RDU00_RS12230 (RDU00_12230) yqiH 2316230..2316523 (-) 294 WP_003230284.1 lipoprotein -
  RDU00_RS12235 (RDU00_12235) - 2316831..2316983 (+) 153 WP_003230276.1 hypothetical protein -
  RDU00_RS12240 (RDU00_12240) yqiG 2317056..2318174 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  RDU00_RS12245 (RDU00_12245) spo0A 2318639..2319442 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  RDU00_RS12250 (RDU00_12250) spoIVB 2319718..2320998 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  RDU00_RS12255 (RDU00_12255) recN 2321173..2322903 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  RDU00_RS12260 (RDU00_12260) argR 2322940..2323389 (-) 450 WP_003230265.1 arginine repressor ArgR -
  RDU00_RS12265 (RDU00_12265) yqxC 2323487..2324332 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=874214 RDU00_RS12245 WP_003226427.1 2318639..2319442(-) (spo0A) [Bacillus subtilis strain KK195]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=874214 RDU00_RS12245 WP_003226427.1 2318639..2319442(-) (spo0A) [Bacillus subtilis strain KK195]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1