Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RDU00_RS11260 Genome accession   NZ_CP133449
Coordinates   2141420..2142040 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain KK195     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2136420..2147040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS11220 (RDU00_11220) ptsA 2137551..2138057 (-) 507 WP_009967573.1 PTS sugar transporter subunit IIA -
  RDU00_RS11225 (RDU00_11225) ypqA 2138195..2138614 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  RDU00_RS11230 (RDU00_11230) sppG 2138635..2139012 (-) 378 WP_004398696.1 YppG family protein -
  RDU00_RS11235 (RDU00_11235) yppF 2139200..2139388 (+) 189 WP_003230690.1 YppF family protein -
  RDU00_RS11240 (RDU00_11240) yppE 2139427..2139798 (-) 372 WP_003246080.1 YppE family protein -
  RDU00_RS11245 (RDU00_11245) yppD 2139844..2140089 (-) 246 WP_004398488.1 YppD family protein -
  RDU00_RS11250 (RDU00_11250) sspM 2140288..2140392 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  RDU00_RS11255 (RDU00_11255) yppC 2140417..2141379 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  RDU00_RS11260 (RDU00_11260) recU 2141420..2142040 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  RDU00_RS11265 (RDU00_11265) ponA 2142062..2144806 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  RDU00_RS11270 (RDU00_11270) ypoC 2144882..2145376 (-) 495 WP_009967579.1 YpoC family protein -
  RDU00_RS11275 (RDU00_11275) nth 2145373..2146032 (-) 660 WP_009967580.1 endonuclease III -
  RDU00_RS11280 (RDU00_11280) dnaD 2146051..2146749 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=874213 RDU00_RS11260 WP_004399067.1 2141420..2142040(+) (recU) [Bacillus subtilis strain KK195]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=874213 RDU00_RS11260 WP_004399067.1 2141420..2142040(+) (recU) [Bacillus subtilis strain KK195]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1