Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RDU00_RS04460 Genome accession   NZ_CP133449
Coordinates   877556..878350 (+) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis strain KK195     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 872556..883350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS04430 (RDU00_04440) sxzA 873395..874426 (+) 1032 WP_003243057.1 FecCD family ABC transporter permease -
  RDU00_RS04435 (RDU00_04445) yfhB 874541..875422 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  RDU00_RS04440 (RDU00_04450) yfhC 875510..876094 (+) 585 WP_003243940.1 nitroreductase -
  RDU00_RS04445 (RDU00_04455) yfhD 876133..876324 (-) 192 WP_003233561.1 YfhD family protein -
  RDU00_RS04450 (RDU00_04460) yfhE 876391..876501 (-) 111 WP_003223230.1 YfhE family protein -
  RDU00_RS04455 (RDU00_04465) yfhF 876556..877467 (-) 912 WP_003244332.1 TIGR01777 family oxidoreductase -
  RDU00_RS04460 (RDU00_04470) recX 877556..878350 (+) 795 WP_003243354.1 recombination regulator RecX Regulator
  RDU00_RS04465 (RDU00_04475) yfhH 878352..878666 (+) 315 WP_003244592.1 YfhH family protein -
  RDU00_RS04470 (RDU00_04480) yfhI 878809..880002 (+) 1194 WP_003243500.1 MFS transporter -
  RDU00_RS04475 (RDU00_04485) sspK 880035..880187 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  RDU00_RS04480 (RDU00_04490) yfhJ 880312..880581 (+) 270 WP_003243789.1 YfhJ family protein -
  RDU00_RS04485 (RDU00_04495) yfhK 880726..881244 (+) 519 WP_003243363.1 SH3 domain-containing protein -
  RDU00_RS04490 (RDU00_04500) spdL 881329..881661 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  RDU00_RS04495 (RDU00_04505) ephM 881648..882508 (+) 861 WP_003243419.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=874189 RDU00_RS04460 WP_003243354.1 877556..878350(+) (recX) [Bacillus subtilis strain KK195]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=874189 RDU00_RS04460 WP_003243354.1 877556..878350(+) (recX) [Bacillus subtilis strain KK195]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1