Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   RDU00_RS01910 Genome accession   NZ_CP133449
Coordinates   355645..356043 (-) Length   132 a.a.
NCBI ID   WP_003246342.1    Uniprot ID   A0AAE2SGH7
Organism   Bacillus subtilis strain KK195     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 350645..361043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS01880 (RDU00_01875) yckA 351221..351901 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  RDU00_RS01885 (RDU00_01880) yckB 351911..352774 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  RDU00_RS01890 (RDU00_01885) - 352936..353133 (+) 198 WP_119122841.1 hypothetical protein -
  RDU00_RS01895 (RDU00_01890) yckC 353152..353607 (+) 456 WP_003246356.1 RDD family protein -
  RDU00_RS01900 (RDU00_01895) yckD 353689..354021 (+) 333 WP_003246247.1 YckD family protein -
  RDU00_RS01905 (RDU00_01900) bglC 354175..355608 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  RDU00_RS01910 (RDU00_01905) nin/comJ 355645..356043 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  RDU00_RS01915 (RDU00_01910) nucA/comI 356070..356519 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  RDU00_RS01920 (RDU00_01915) tlpC 356687..358408 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  RDU00_RS01925 (RDU00_01920) hxlB 358519..359076 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  RDU00_RS01930 (RDU00_01925) hxlA 359082..359714 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  RDU00_RS01935 (RDU00_01930) hxlR 359948..360310 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14996.95 Da        Isoelectric Point: 4.8991

>NTDB_id=874183 RDU00_RS01910 WP_003246342.1 355645..356043(-) (nin/comJ) [Bacillus subtilis strain KK195]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=874183 RDU00_RS01910 WP_003246342.1 355645..356043(-) (nin/comJ) [Bacillus subtilis strain KK195]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTTCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

100

100

1