Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RDU00_RS01695 Genome accession   NZ_CP133449
Coordinates   310374..310952 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain KK195     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 305374..315952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS01665 (RDU00_01665) amhX 306014..307165 (-) 1152 WP_003246319.1 M20 peptidase aminoacylase family protein -
  RDU00_RS01670 (RDU00_01670) ycgA 307315..308748 (+) 1434 WP_009966488.1 YfcC family protein -
  RDU00_RS01675 (RDU00_01675) ycgB 308864..309445 (+) 582 WP_003246445.1 DUF6773 family protein -
  RDU00_RS01680 (RDU00_01680) amyE 309594..310115 (+) 522 Protein_286 alpha-amylase -
  RDU00_RS01685 (RDU00_01685) - 310096..310239 (-) 144 Protein_287 condensation domain-containing protein -
  RDU00_RS01690 (RDU00_01690) comS 310185..310325 (-) 141 WP_010886404.1 competence protein ComS Regulator
  RDU00_RS01695 (RDU00_01695) comK 310374..310952 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  RDU00_RS01700 (RDU00_01700) - 311537..312400 (+) 864 WP_025811090.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(D) -
  RDU00_RS01705 (RDU00_01705) amyE 312472..313513 (+) 1042 Protein_291 alpha-amylase -
  RDU00_RS01710 (RDU00_01710) lctE 313690..314655 (+) 966 WP_003234685.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=874182 RDU00_RS01695 WP_003245329.1 310374..310952(-) (comK) [Bacillus subtilis strain KK195]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=874182 RDU00_RS01695 WP_003245329.1 310374..310952(-) (comK) [Bacillus subtilis strain KK195]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATCGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1