Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RDJ18_RS10835 Genome accession   NZ_CP133442
Coordinates   2148483..2149262 (+) Length   259 a.a.
NCBI ID   WP_000688495.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA191     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2143483..2154262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ18_RS10805 (RDJ18_10805) - 2143702..2144328 (+) 627 WP_000522384.1 nitroreductase family protein -
  RDJ18_RS10810 (RDJ18_10810) - 2144689..2145474 (+) 786 WP_000867960.1 carbon-nitrogen family hydrolase -
  RDJ18_RS14750 hld 2146071..2146151 (-) 81 WP_000046022.1 delta-hemolysin -
  RDJ18_RS10820 (RDJ18_10820) agrB 2146441..2147010 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  RDJ18_RS10825 (RDJ18_10825) agrD 2147007..2147147 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  RDJ18_RS10830 (RDJ18_10830) agrC 2147172..2148464 (+) 1293 WP_029658520.1 quorum-sensing sensor histidine kinase AgrC -
  RDJ18_RS10835 (RDJ18_10835) agrA 2148483..2149262 (+) 780 WP_000688495.1 quorum-sensing response regulator AgrA Regulator
  RDJ18_RS10840 (RDJ18_10840) - 2149270..2149377 (+) 108 WP_001790167.1 hypothetical protein -
  RDJ18_RS10845 (RDJ18_10845) - 2149565..2150524 (-) 960 WP_001253312.1 carbohydrate kinase -
  RDJ18_RS10850 (RDJ18_10850) - 2150521..2152005 (-) 1485 WP_000141417.1 sucrose-6-phosphate hydrolase -
  RDJ18_RS10855 (RDJ18_10855) - 2152154..2153104 (-) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 30361.82 Da        Isoelectric Point: 6.8880

>NTDB_id=874146 RDJ18_RS10835 WP_000688495.1 2148483..2149262(+) (agrA) [Staphylococcus aureus strain SA191]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKYNK
IIKSVNGVFNCKSCWILTR

Nucleotide


Download         Length: 780 bp        

>NTDB_id=874146 RDJ18_RS10835 WP_000688495.1 2148483..2149262(+) (agrA) [Staphylococcus aureus strain SA191]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAATATAATAAG
ATAATAAAGTCAGTTAACGGCGTATTCAATTGTAAATCTTGTTGGATTTTAACAAGATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-242)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

91.506

0.915