Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RDJ12_RS07560 Genome accession   NZ_CP133437
Coordinates   1606726..1607130 (+) Length   134 a.a.
NCBI ID   WP_261919966.1    Uniprot ID   A0A8E3S805
Organism   Mergibacter septicus strain 19Y0039     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1601726..1612130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ12_RS07535 (RDJ12_07535) - 1601726..1603384 (+) 1659 WP_261919971.1 ParB family protein -
  RDJ12_RS07540 (RDJ12_07540) - 1603403..1603963 (+) 561 WP_265482654.1 DUF2857 domain-containing protein -
  RDJ12_RS07545 (RDJ12_07545) - 1603956..1605065 (+) 1110 WP_261919969.1 STY4528 family pathogenicity island replication protein -
  RDJ12_RS07550 (RDJ12_07550) - 1605167..1605868 (+) 702 WP_261919968.1 PFL_4669 family integrating conjugative element protein -
  RDJ12_RS07555 (RDJ12_07555) - 1605875..1606369 (+) 495 WP_261919967.1 DUF3158 family protein -
  RDJ12_RS07560 (RDJ12_07560) ssb 1606726..1607130 (+) 405 WP_261919966.1 single-stranded DNA-binding protein Machinery gene
  RDJ12_RS07565 (RDJ12_07565) - 1607266..1609326 (+) 2061 WP_261919965.1 DNA topoisomerase III -
  RDJ12_RS07570 (RDJ12_07570) - 1610080..1610574 (+) 495 WP_261919964.1 STY4534 family ICE replication protein -
  RDJ12_RS07575 (RDJ12_07575) - 1610719..1611093 (+) 375 WP_261919963.1 hypothetical protein -
  RDJ12_RS07580 (RDJ12_07580) - 1611215..1611595 (+) 381 WP_261919962.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15567.45 Da        Isoelectric Point: 6.4843

>NTDB_id=874060 RDJ12_RS07560 WP_261919966.1 1606726..1607130(+) (ssb) [Mergibacter septicus strain 19Y0039]
MAGINKAIIVGNLGNEPELRSFPNGDSVAVINVATSDRWQDKQTGEWREVTEWHRIVFYRRLAEIVGEYLHKGSKVYVEG
KFKTRKWKDENGQERQTKEIQGEILQMLDTKPQNSKTQNLSNNIQQYNDDDMLI

Nucleotide


Download         Length: 405 bp        

>NTDB_id=874060 RDJ12_RS07560 WP_261919966.1 1606726..1607130(+) (ssb) [Mergibacter septicus strain 19Y0039]
ATGGCAGGTATAAACAAAGCAATTATTGTCGGAAATCTAGGTAATGAACCCGAACTACGATCATTTCCGAATGGTGATTC
AGTCGCAGTAATTAATGTGGCAACTAGTGATCGTTGGCAGGATAAACAAACAGGTGAATGGCGAGAAGTAACAGAATGGC
ACCGTATTGTATTCTATCGTCGATTAGCTGAAATTGTCGGTGAATATTTGCATAAAGGATCAAAAGTTTATGTCGAAGGA
AAGTTTAAAACCCGAAAGTGGAAAGATGAAAATGGACAAGAACGACAAACGAAAGAGATCCAGGGAGAAATTTTACAGAT
GTTAGATACAAAACCACAAAATTCAAAAACACAAAATTTATCAAATAACATTCAACAATATAACGATGATGACATGTTAA
TCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

71.171

82.836

0.59
  ssb Vibrio cholerae strain A1552

53.913

85.821

0.463
  ssb Neisseria meningitidis MC58

45.536

83.582

0.381
  ssb Neisseria gonorrhoeae MS11

45.536

83.582

0.381