Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   WJ438_RS10970 Genome accession   NZ_CP149447
Coordinates   2337181..2337588 (-) Length   135 a.a.
NCBI ID   WP_406725061.1    Uniprot ID   -
Organism   Streptomyces sp. GD-15H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2332181..2342588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ438_RS10945 (WJ438_10925) - 2332931..2333500 (+) 570 WP_406725057.1 hypothetical protein -
  WJ438_RS10950 (WJ438_10930) - 2333748..2334206 (+) 459 WP_406725058.1 DUF4383 domain-containing protein -
  WJ438_RS10955 (WJ438_10935) - 2336156..2336428 (+) 273 WP_406729651.1 glutamate-cysteine ligase family protein -
  WJ438_RS10960 (WJ438_10940) - 2336425..2336892 (+) 468 WP_406725059.1 GAF domain-containing protein -
  WJ438_RS10965 (WJ438_10945) - 2336877..2337137 (+) 261 WP_406725060.1 ANTAR domain-containing protein -
  WJ438_RS10970 (WJ438_10950) recS 2337181..2337588 (-) 408 WP_406725061.1 DEAD/DEAH box helicase Machinery gene
  WJ438_RS10975 (WJ438_10955) - 2337573..2337728 (-) 156 WP_406725062.1 DEAD/DEAH box helicase -
  WJ438_RS10980 (WJ438_10960) - 2337851..2337997 (+) 147 Protein_2188 hemerythrin domain-containing protein -
  WJ438_RS10985 (WJ438_10965) - 2338036..2338284 (-) 249 WP_406725063.1 hypothetical protein -
  WJ438_RS10990 (WJ438_10970) - 2338362..2338991 (-) 630 WP_406725064.1 Rho termination factor N-terminal domain-containing protein -
  WJ438_RS10995 (WJ438_10975) - 2339360..2339833 (-) 474 WP_406725065.1 hypothetical protein -
  WJ438_RS11000 (WJ438_10980) - 2340018..2340617 (+) 600 WP_406725066.1 hemerythrin domain-containing protein -
  WJ438_RS11005 (WJ438_10985) - 2340795..2341889 (-) 1095 WP_406725067.1 glutamate--cysteine ligase -
  WJ438_RS11010 (WJ438_10990) - 2341983..2342351 (-) 369 WP_406725068.1 hypothetical protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14230.16 Da        Isoelectric Point: 6.2278

>NTDB_id=873966 WJ438_RS10970 WP_406725061.1 2337181..2337588(-) (recS) [Streptomyces sp. GD-15H]
MVSPLIASQRDQVTGLRESAAPDAVAVNSAQSESAADRGGRSGRAMPTEYLLLSPELLAKDSVLKRSRELGPSLFVVDEA
HCVSARGSDFRPDHLSLSEAAERLGRPPVLALTATAAAPVRADIIERLHMCGALS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=873966 WJ438_RS10970 WP_406725061.1 2337181..2337588(-) (recS) [Streptomyces sp. GD-15H]
GTGGTGTCGCCGCTGATCGCCTCGCAGCGCGACCAGGTCACGGGACTGCGGGAGAGTGCGGCACCGGACGCCGTGGCCGT
GAACTCCGCGCAGTCTGAGTCGGCCGCAGACAGGGGCGGGCGGTCCGGGAGGGCGATGCCGACCGAGTACCTGCTCCTGT
CACCGGAGCTGCTCGCCAAGGACAGTGTTCTGAAGCGGTCGCGTGAGCTGGGCCCCTCGCTGTTCGTCGTCGACGAGGCC
CACTGCGTCTCCGCGCGGGGGTCCGATTTCCGCCCCGATCACCTGAGCCTGAGTGAGGCCGCCGAACGGCTGGGCCGTCC
GCCGGTGCTCGCGCTGACGGCGACGGCCGCGGCCCCGGTCCGGGCCGACATCATCGAGCGCCTGCACATGTGCGGCGCCC
TGTCGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

40

96.296

0.385