Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   WDR05_RS20840 Genome accession   NZ_CP149444
Coordinates   4028875..4029669 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain HC-9     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4023875..4034669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS20815 (WDR05_20795) - 4024989..4025672 (-) 684 WP_024573086.1 response regulator transcription factor -
  WDR05_RS20820 (WDR05_20800) - 4025884..4026783 (+) 900 WP_140600086.1 PepSY domain-containing protein -
  WDR05_RS20825 (WDR05_20805) - 4026944..4027444 (+) 501 WP_069323038.1 PepSY domain-containing protein -
  WDR05_RS20830 (WDR05_20810) - 4027441..4027570 (-) 130 Protein_4048 hypothetical protein -
  WDR05_RS20835 (WDR05_20815) htrA 4027591..4028793 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  WDR05_RS20840 (WDR05_20820) vicX 4028875..4029669 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  WDR05_RS20845 (WDR05_20825) walI 4029691..4030533 (-) 843 WP_029318542.1 WalRK two-component regulatory system regulator WalI -
  WDR05_RS20850 (WDR05_20830) walH 4030520..4031887 (-) 1368 WP_029318541.1 WalRK two-component regulatory system regulator WalH -
  WDR05_RS20855 (WDR05_20835) walK 4031877..4033712 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  WDR05_RS20860 (WDR05_20840) walR 4033720..4034427 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=873958 WDR05_RS20840 WP_003226939.1 4028875..4029669(-) (vicX) [Bacillus subtilis strain HC-9]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=873958 WDR05_RS20840 WP_003226939.1 4028875..4029669(-) (vicX) [Bacillus subtilis strain HC-9]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGTGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53