Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WDR05_RS18910 Genome accession   NZ_CP149444
Coordinates   3643480..3644613 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain HC-9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3638480..3649613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS18870 (WDR05_18850) ywnA 3638642..3639043 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  WDR05_RS18875 (WDR05_18855) ureC 3639178..3640887 (-) 1710 WP_029726053.1 urease subunit alpha -
  WDR05_RS18880 (WDR05_18860) ureB 3640884..3641258 (-) 375 WP_029726054.1 urease subunit beta -
  WDR05_RS18885 (WDR05_18865) ureA 3641255..3641572 (-) 318 WP_003227724.1 urease subunit gamma -
  WDR05_RS18890 (WDR05_18870) - 3641763..3641923 (-) 161 Protein_3660 hypothetical protein -
  WDR05_RS18895 (WDR05_18875) - 3642159..3642371 (-) 213 Protein_3661 urea ABC transporter substrate-binding protein -
  WDR05_RS18900 (WDR05_18880) csbD 3642584..3642772 (-) 189 WP_015251021.1 stress response protein CsbD -
  WDR05_RS18905 (WDR05_18885) - 3642845..3643324 (-) 480 WP_003244390.1 hypothetical protein -
  WDR05_RS18910 (WDR05_18890) rapC 3643480..3644613 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  WDR05_RS18915 (WDR05_18895) moaA 3644805..3645830 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  WDR05_RS18920 (WDR05_18900) fdhD 3645846..3646634 (-) 789 WP_015714864.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  WDR05_RS18925 (WDR05_18905) - 3646880..3647041 (-) 162 WP_015714865.1 hypothetical protein -
  WDR05_RS18930 (WDR05_18910) ywmD 3647136..3647810 (-) 675 WP_003243553.1 VWA domain-containing protein -
  WDR05_RS18935 (WDR05_18915) - 3647863..3648003 (-) 141 WP_014478246.1 hypothetical protein -
  WDR05_RS18940 (WDR05_18920) ywmC 3648134..3648817 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=873948 WDR05_RS18910 WP_003227715.1 3643480..3644613(-) (rapC) [Bacillus subtilis strain HC-9]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=873948 WDR05_RS18910 WP_003227715.1 3643480..3644613(-) (rapC) [Bacillus subtilis strain HC-9]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGTGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424