Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WDR05_RS15295 Genome accession   NZ_CP149444
Coordinates   2934237..2934947 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2929237..2939947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS15275 (WDR05_15260) cysK 2929289..2930224 (+) 936 WP_003229237.1 cysteine synthase A -
  WDR05_RS15280 (WDR05_15265) pepV 2930258..2931649 (-) 1392 WP_014477689.1 dipeptidase PepV -
  WDR05_RS15285 (WDR05_15270) pbuO 2931746..2933044 (+) 1299 WP_029726423.1 hypoxanthine/guanine permease PbuO -
  WDR05_RS15290 (WDR05_15275) ythQ 2933083..2934240 (-) 1158 WP_029726424.1 ABC transporter permease -
  WDR05_RS15295 (WDR05_15280) pptA 2934237..2934947 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  WDR05_RS15300 (WDR05_15285) ytzE 2935238..2935459 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  WDR05_RS15305 (WDR05_15290) rsuA 2935581..2936300 (-) 720 WP_017695479.1 pseudouridine synthase -
  WDR05_RS15310 (WDR05_15295) murJ 2936369..2938003 (-) 1635 WP_015251430.1 lipid II flippase MurJ -
  WDR05_RS15315 (WDR05_15300) ytfP 2938206..2939468 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=873928 WDR05_RS15295 WP_015714539.1 2934237..2934947(-) (pptA) [Bacillus subtilis strain HC-9]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=873928 WDR05_RS15295 WP_015714539.1 2934237..2934947(-) (pptA) [Bacillus subtilis strain HC-9]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAGCTGGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432