Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   WDR05_RS09435 Genome accession   NZ_CP149444
Coordinates   1789697..1790128 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain HC-9     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1784697..1795128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS09415 (WDR05_09410) spoVS 1785258..1785518 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  WDR05_RS09420 (WDR05_09415) tdh 1785784..1786827 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  WDR05_RS09425 (WDR05_09420) kbl 1786840..1788018 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  WDR05_RS09430 (WDR05_09425) miaB 1788166..1789695 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  WDR05_RS09435 (WDR05_09430) ymcA 1789697..1790128 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  WDR05_RS09440 (WDR05_09435) cotE 1790390..1790935 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  WDR05_RS09445 (WDR05_09440) hexA 1791068..1793644 (+) 2577 WP_029726481.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=873884 WDR05_RS09435 WP_003231834.1 1789697..1790128(+) (ymcA) [Bacillus subtilis strain HC-9]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=873884 WDR05_RS09435 WP_003231834.1 1789697..1790128(+) (ymcA) [Bacillus subtilis strain HC-9]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1