Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WDR05_RS07060 Genome accession   NZ_CP149444
Coordinates   1333021..1334157 (+) Length   378 a.a.
NCBI ID   WP_128422183.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1328021..1339157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS07040 (WDR05_07035) uxaA 1328472..1329965 (+) 1494 WP_029317659.1 UxaA family hydrolase -
  WDR05_RS07045 (WDR05_07040) yjnA 1330004..1330768 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  WDR05_RS07050 (WDR05_07045) bstD 1330992..1331456 (-) 465 WP_014479541.1 DinB family protein -
  WDR05_RS07055 (WDR05_07050) yjoB 1331605..1332876 (+) 1272 WP_120363333.1 ATPase YjoB -
  WDR05_RS07060 (WDR05_07055) rapC 1333021..1334157 (+) 1137 WP_128422183.1 response regulator aspartate phosphatase RapA Regulator
  WDR05_RS07065 (WDR05_07060) phrA 1334147..1334281 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  WDR05_RS07070 (WDR05_07065) yjpA 1334312..1334569 (-) 258 WP_003232731.1 YciI family protein -
  WDR05_RS07075 (WDR05_07070) xlyB 1334689..1335642 (+) 954 WP_128422184.1 N-acetylmuramoyl-L-alanine amidase -
  WDR05_RS07080 (WDR05_07075) yjqA 1335682..1336059 (-) 378 WP_014479546.1 PH domain-containing protein -
  WDR05_RS07085 (WDR05_07080) pghB 1336165..1336767 (+) 603 WP_003232725.1 poly-gamma-glutamate hydrolase family protein -
  WDR05_RS07090 (WDR05_07085) xpdC 1336844..1337680 (+) 837 WP_003245071.1 manganese catalase family protein -
  WDR05_RS07095 (WDR05_07090) xkdA 1337737..1338333 (-) 597 WP_015715727.1 ImmA/IrrE family metallo-endopeptidase -
  WDR05_RS07100 (WDR05_07095) xre 1338496..1338837 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45047.21 Da        Isoelectric Point: 4.6857

>NTDB_id=873863 WDR05_RS07060 WP_128422183.1 1333021..1334157(+) (rapC) [Bacillus subtilis strain HC-9]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTEVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=873863 WDR05_RS07060 WP_128422183.1 1333021..1334157(+) (rapC) [Bacillus subtilis strain HC-9]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGTTGGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCTTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACAGAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415