Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WDR05_RS03765 Genome accession   NZ_CP149444
Coordinates   731303..732433 (+) Length   376 a.a.
NCBI ID   WP_069703758.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 726303..737433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS03740 (WDR05_03745) - 726389..726640 (-) 252 WP_069703754.1 bacteriocin immunity protein -
  WDR05_RS03745 (WDR05_03750) - 726883..727353 (-) 471 WP_069703775.1 antitoxin YezG family protein -
  WDR05_RS03750 (WDR05_03755) - 727414..727893 (-) 480 WP_069703755.1 antitoxin YezG family protein -
  WDR05_RS03755 (WDR05_03760) yeeF 727898..729907 (-) 2010 WP_069703756.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  WDR05_RS03760 (WDR05_03765) - 730119..731141 (+) 1023 WP_069703757.1 hypothetical protein -
  WDR05_RS03765 (WDR05_03770) rapC 731303..732433 (+) 1131 WP_069703758.1 response regulator aspartate phosphatase RapH Regulator
  WDR05_RS03770 (WDR05_03775) phrH 732423..732602 (+) 180 WP_038428551.1 phosphatase RapH inhibitor PhrH -
  WDR05_RS03775 (WDR05_03780) yeeI 732762..733481 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  WDR05_RS03780 (WDR05_03785) yeeK 733615..734031 (+) 417 WP_038427497.1 spore coat protein YeeK -
  WDR05_RS03785 (WDR05_03790) yezE 734145..734729 (+) 585 WP_038427498.1 TetR/AcrR family transcriptional regulator -
  WDR05_RS03790 (WDR05_03795) yesE 734808..735251 (+) 444 WP_038427500.1 nuclear transport factor 2 family protein -
  WDR05_RS03795 (WDR05_03800) yesF 735248..736096 (+) 849 WP_015252622.1 NAD-dependent epimerase/dehydratase family protein -
  WDR05_RS03800 (WDR05_03805) cotJA 736243..736491 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  WDR05_RS03805 (WDR05_03810) cotJB 736475..736738 (+) 264 WP_003219491.1 spore coat protein CotJB -
  WDR05_RS03810 (WDR05_03815) cotJC 736753..737322 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44014.40 Da        Isoelectric Point: 5.8866

>NTDB_id=873837 WDR05_RS03765 WP_069703758.1 731303..732433(+) (rapC) [Bacillus subtilis strain HC-9]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLETALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLCWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=873837 WDR05_RS03765 WP_069703758.1 731303..732433(+) (rapC) [Bacillus subtilis strain HC-9]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTGGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGACGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTATGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399