Detailed information NTG0873836

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: WDR05_RS03730
• Genome accession: NZ_CP149444
• Coordinates: 724749..725876 (-)
• Length: 375 a.a.
• NCBI ID: WP_080477800.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain HC-9
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 719749..730876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDR05_RS03715 (WDR05_03720)	-	720377..722281 (+)	1905	WP_069703751.1	class I SAM-dependent DNA methyltransferase	-
WDR05_RS03720 (WDR05_03725)	-	722284..723315 (+)	1032	WP_069703752.1	restriction endonuclease subunit S	-
WDR05_RS03725 (WDR05_03730)	-	724562..724759 (-)	198	WP_003240078.1	hypothetical protein	-
WDR05_RS03730 (WDR05_03735)	rapC	724749..725876 (-)	1128	WP_080477800.1	Rap family tetratricopeptide repeat protein	Regulator
WDR05_RS03735 (WDR05_03740)	-	726065..726367 (-)	303	WP_069703753.1	hypothetical protein	-
WDR05_RS03740 (WDR05_03745)	-	726389..726640 (-)	252	WP_069703754.1	bacteriocin immunity protein	-
WDR05_RS03745 (WDR05_03750)	-	726883..727353 (-)	471	WP_069703775.1	antitoxin YezG family protein	-
WDR05_RS03750 (WDR05_03755)	-	727414..727893 (-)	480	WP_069703755.1	antitoxin YezG family protein	-
WDR05_RS03755 (WDR05_03760)	yeeF	727898..729907 (-)	2010	WP_069703756.1	LXG family T7SS effector deoxyribonuclease toxin YeeF	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44462.17 Da
• Isoelectric Point: 6.6870

>NTDB_id=873836 WDR05_RS03730 WP_080477800.1 724749..725876(-) (rapC) [Bacillus subtilis strain HC-9]
MGTISSPHVGMKINEWNRHIQKFNVTDAEMLKAEIERDIDIMEEDQDLLIYYQLIAFRHQLMIDYVIPTEGNQMELSEYL
KRIEGSNRKMEKLVEYYYYFFQGMYEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKMGELTKAAK
YMEKSIFQFKKSNFNNLTQAYHDLALIYFLQHKQEQAMDCFRKGVRFACKFDDDLFKIMFEGLQALFIKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide

• Length: 1128 bp

>NTDB_id=873836 WDR05_RS03730 WP_080477800.1 724749..725876(-) (rapC) [Bacillus subtilis strain HC-9]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATGAAAATTAATGAGTGGAACCGGCATATTCAAAAGTTTAATGTGACTGA
CGCTGAAATGCTTAAAGCTGAGATCGAACGGGACATTGACATCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGCATTTCGCCATCAGCTTATGATTGACTATGTGATTCCTACTGAAGGAAACCAAATGGAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAGCTCGTTGAATACTACTATTACTTTTTTCAAGGAATGTATGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAACACAATTCCCTATATTTCAGATGAAATTG
AGCGGGCGGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCACGTATCCATGCACTATTCTTCT
CAGGCGTATAACATCTATAAAACGCACGACCTTTACTCAGTCCGCCGCATACAATGCCATTTTGTAATAGCAGGTAATTA
CGACGATTTAGAAAGTCATGAAAAGGCGCTCCCTCACCTCGAACAGGCACTAAAAGGCGCACGGCTGCTTGAAAGCAAAA
ACAAGCGGATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATGGGAGAATTGACGAAAGCAGCAAAA
TACATGGAGAAATCGATATTCCAATTTAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGAACAGGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGATGATG
ACCTATTTAAAATTATGTTTGAAGGATTGCAGGCGCTGTTTATCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCAGAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (259-286)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (3-64)

• Tetratricopeptide repeat (TPR_12) (187-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.689	100	0.421
rapF	Bacillus subtilis subsp. subtilis str. 168	38.786	100	0.392