Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   WDR05_RS00330 Genome accession   NZ_CP149444
Coordinates   59654..59884 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain HC-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54654..64884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS00300 (WDR05_00300) ridA 54818..55195 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  WDR05_RS00305 (WDR05_00305) spoVG 55390..55683 (+) 294 WP_003218346.1 septation regulator SpoVG -
  WDR05_RS00310 (WDR05_00310) glmU 55876..57246 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  WDR05_RS00315 (WDR05_00315) prsS 57269..58222 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  WDR05_RS00320 (WDR05_00320) rplYB 58307..58921 (+) 615 WP_029726391.1 50S ribosomal protein L25/general stress protein Ctc -
  WDR05_RS00325 (WDR05_00325) pth 59028..59594 (+) 567 WP_029726390.1 aminoacyl-tRNA hydrolase -
  WDR05_RS00330 (WDR05_00330) subA/fin 59654..59884 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  WDR05_RS00335 (WDR05_00335) mfd 59954..63487 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  WDR05_RS00340 (WDR05_00340) spoVT 63623..64159 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=873815 WDR05_RS00330 WP_003243417.1 59654..59884(+) (subA/fin) [Bacillus subtilis strain HC-9]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=873815 WDR05_RS00330 WP_003243417.1 59654..59884(+) (subA/fin) [Bacillus subtilis strain HC-9]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAGGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCACATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1