Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Q5384_RS08525 Genome accession   NZ_CP133410
Coordinates   1832128..1832754 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain AG32E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1827128..1837754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5384_RS08505 (Q5384_08505) - 1827522..1829282 (-) 1761 WP_324285303.1 Lon protease family protein -
  Q5384_RS08510 (Q5384_08510) matP 1829469..1829921 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  Q5384_RS08515 (Q5384_08515) ompA 1829991..1831046 (-) 1056 WP_020884794.1 porin OmpA -
  Q5384_RS08520 (Q5384_08520) sulA 1831401..1831910 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  Q5384_RS08525 (Q5384_08525) sxy/tfoX 1832128..1832754 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  Q5384_RS08530 (Q5384_08530) yccS 1832711..1834873 (-) 2163 WP_047366246.1 YccS family putative transporter -
  Q5384_RS08535 (Q5384_08535) - 1834893..1835339 (-) 447 WP_025204535.1 YccF domain-containing protein -
  Q5384_RS08540 (Q5384_08540) helD 1835463..1837517 (+) 2055 WP_324285304.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=873812 Q5384_RS08525 WP_020884792.1 1832128..1832754(+) (sxy/tfoX) [Enterobacter ludwigii strain AG32E]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=873812 Q5384_RS08525 WP_020884792.1 1832128..1832754(+) (sxy/tfoX) [Enterobacter ludwigii strain AG32E]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGTGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAGCTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCATCATTCTTAACCCTGATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCGCG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCGCTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGTTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577