Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RDI40_RS02425 Genome accession   NZ_CP133409
Coordinates   437776..438402 (+) Length   208 a.a.
NCBI ID   WP_171931964.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain LE43E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 432776..443402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDI40_RS02405 (RDI40_02400) - 433175..434935 (-) 1761 WP_303756346.1 Lon protease family protein -
  RDI40_RS02410 (RDI40_02405) matP 435122..435574 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  RDI40_RS02415 (RDI40_02410) ompA 435640..436692 (-) 1053 WP_017694761.1 porin OmpA -
  RDI40_RS02420 (RDI40_02415) sulA 437049..437558 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  RDI40_RS02425 (RDI40_02420) sxy/tfoX 437776..438402 (+) 627 WP_171931964.1 TfoX/Sxy family DNA transformation protein Regulator
  RDI40_RS02430 (RDI40_02425) yccS 438359..440521 (-) 2163 WP_023305820.1 YccS family putative transporter -
  RDI40_RS02435 (RDI40_02430) - 440540..440986 (-) 447 WP_022647660.1 YccF domain-containing protein -
  RDI40_RS02440 (RDI40_02435) helD 441109..443163 (+) 2055 WP_163347220.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24016.60 Da        Isoelectric Point: 9.4592

>NTDB_id=873783 RDI40_RS02425 WP_171931964.1 437776..438402(+) (sxy/tfoX) [Enterobacter hormaechei strain LE43E]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRILFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=873783 RDI40_RS02425 WP_171931964.1 437776..438402(+) (sxy/tfoX) [Enterobacter hormaechei strain LE43E]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGTGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTATTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGATATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.406

97.115

0.577