Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LLI816_RS06185 Genome accession   NZ_CP149095
Coordinates   1196673..1197743 (-) Length   356 a.a.
NCBI ID   WP_063283631.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain I8-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1191673..1202743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLI816_RS06170 (LLI816_06170) dprA 1191971..1192819 (+) 849 WP_012897825.1 DNA-processing protein DprA Machinery gene
  LLI816_RS06175 (LLI816_06175) topA 1193081..1195213 (+) 2133 WP_063283633.1 type I DNA topoisomerase -
  LLI816_RS06180 (LLI816_06180) trmFO 1195285..1196628 (+) 1344 WP_063283632.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LLI816_RS06185 (LLI816_06185) xerS 1196673..1197743 (-) 1071 WP_063283631.1 tyrosine recombinase XerS Machinery gene
  LLI816_RS06190 (LLI816_06190) - 1198335..1198949 (-) 615 Protein_1193 tyrosine-type recombinase/integrase -
  LLI816_RS06195 (LLI816_06195) - 1199098..1199235 (-) 138 WP_153915251.1 hypothetical protein -
  LLI816_RS06200 (LLI816_06200) - 1200135..1201892 (+) 1758 WP_014570605.1 CocE/NonD family hydrolase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41398.15 Da        Isoelectric Point: 9.6568

>NTDB_id=873761 LLI816_RS06185 WP_063283631.1 1196673..1197743(-) (xerS) [Lactococcus lactis subsp. lactis strain I8-16]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAINALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=873761 LLI816_RS06185 WP_063283631.1 1196673..1197743(-) (xerS) [Lactococcus lactis subsp. lactis strain I8-16]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTAATGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGACACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.404

100

0.764