Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RCI27_RS26845 Genome accession   NZ_CP133369
Coordinates   5163868..5164152 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5158868..5169152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI27_RS26830 (RCI27_26830) rnmV 5159692..5160249 (-) 558 WP_000692841.1 ribonuclease M5 -
  RCI27_RS26835 (RCI27_26835) - 5160465..5161232 (-) 768 WP_000895845.1 TatD family hydrolase -
  RCI27_RS26840 (RCI27_26840) metG 5161399..5163381 (-) 1983 WP_000134138.1 methionine--tRNA ligase -
  RCI27_RS26845 (RCI27_26845) abrB 5163868..5164152 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RCI27_RS26850 (RCI27_26850) rsmI 5164173..5165048 (-) 876 WP_016078236.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RCI27_RS26855 (RCI27_26855) - 5165017..5165307 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  RCI27_RS26860 (RCI27_26860) - 5165294..5166034 (-) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RCI27_RS26865 (RCI27_26865) yabA 5166117..5166467 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  RCI27_RS26870 (RCI27_26870) - 5166482..5167309 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  RCI27_RS26875 (RCI27_26875) holB 5167315..5168298 (-) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  RCI27_RS26880 (RCI27_26880) tmk 5168334..5168960 (-) 627 WP_000677218.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=873672 RCI27_RS26845 WP_000843036.1 5163868..5164152(+) (abrB) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=873672 RCI27_RS26845 WP_000843036.1 5163868..5164152(+) (abrB) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851