Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   UXQ75_RS06050 Genome accession   NZ_CP148992
Coordinates   1256485..1257636 (+) Length   383 a.a.
NCBI ID   WP_042908982.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN76     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1251485..1262636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXQ75_RS06025 (UXQ75_06025) yfmH 1252313..1253599 (+) 1287 WP_338949422.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  UXQ75_RS06030 (UXQ75_06030) ymfI 1253599..1254303 (+) 705 WP_000646227.1 elongation factor P 5-aminopentanone reductase -
  UXQ75_RS06035 (UXQ75_06035) - 1254408..1255235 (+) 828 WP_000214890.1 YmfK family protein -
  UXQ75_RS06040 (UXQ75_06040) - 1255254..1255646 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  UXQ75_RS06045 (UXQ75_06045) pgsA 1255680..1256258 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  UXQ75_RS06050 (UXQ75_06050) cinA 1256485..1257636 (+) 1152 WP_042908982.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  UXQ75_RS06055 (UXQ75_06055) recA 1257801..1258844 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  UXQ75_RS06060 (UXQ75_06060) rny 1259198..1260757 (+) 1560 WP_001050913.1 ribonuclease Y -
  UXQ75_RS06065 (UXQ75_06065) - 1261054..1261269 (-) 216 WP_042908980.1 hypothetical protein -
  UXQ75_RS06070 (UXQ75_06070) - 1261443..1262240 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43279.60 Da        Isoelectric Point: 6.1914

>NTDB_id=873672 UXQ75_RS06050 WP_042908982.1 1256485..1257636(+) (cinA) [Staphylococcus aureus strain BSN76]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSIVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=873672 UXQ75_RS06050 WP_042908982.1 1256485..1257636(+) (cinA) [Staphylococcus aureus strain BSN76]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAATTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTTCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431