Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RCI27_RS20115 Genome accession   NZ_CP133369
Coordinates   3892806..3893129 (+) Length   107 a.a.
NCBI ID   WP_000578875.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3887806..3898129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI27_RS20100 (RCI27_20100) - 3888323..3889690 (-) 1368 WP_000028385.1 aldehyde dehydrogenase -
  RCI27_RS20105 (RCI27_20105) inhA1 3889862..3892249 (-) 2388 WP_001035950.1 M6 family metalloprotease immune inhibitor InhA1 -
  RCI27_RS20110 (RCI27_20110) - 3892592..3892726 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  RCI27_RS20115 (RCI27_20115) sinR 3892806..3893129 (+) 324 WP_000578875.1 helix-turn-helix domain-containing protein Regulator
  RCI27_RS20120 (RCI27_20120) calY 3893202..3893795 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  RCI27_RS20125 (RCI27_20125) - 3894184..3894972 (-) 789 WP_016077956.1 DUF4047 domain-containing protein -
  RCI27_RS20130 (RCI27_20130) - 3895107..3895694 (-) 588 WP_000172852.1 CalY family protein -
  RCI27_RS20135 (RCI27_20135) sipW 3895755..3896324 (-) 570 WP_000767804.1 signal peptidase I SipW -
  RCI27_RS20140 (RCI27_20140) - 3896519..3897805 (-) 1287 WP_000247025.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12291.16 Da        Isoelectric Point: 9.9745

>NTDB_id=873658 RCI27_RS20115 WP_000578875.1 3892806..3893129(+) (sinR) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=873658 RCI27_RS20115 WP_000578875.1 3892806..3893129(+) (sinR) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692