Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RCI28_RS28770 Genome accession   NZ_CP133362
Coordinates   5555285..5555569 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis serovar tenebrionis strain BI 256-82     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5550285..5560569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI28_RS28735 (RCI28_28665) tmk 5550477..5551103 (+) 627 WP_000677218.1 dTMP kinase -
  RCI28_RS28740 (RCI28_28670) holB 5551139..5552122 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  RCI28_RS28745 (RCI28_28675) - 5552128..5552955 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  RCI28_RS28750 (RCI28_28680) yabA 5552970..5553320 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  RCI28_RS28755 (RCI28_28685) - 5553403..5554143 (+) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RCI28_RS28760 (RCI28_28690) - 5554130..5554420 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  RCI28_RS28765 (RCI28_28695) rsmI 5554389..5555264 (+) 876 WP_016078236.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RCI28_RS28770 (RCI28_28700) abrB 5555285..5555569 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RCI28_RS28775 (RCI28_28705) metG 5556056..5558038 (+) 1983 WP_000134138.1 methionine--tRNA ligase -
  RCI28_RS28780 (RCI28_28710) - 5558205..5558972 (+) 768 WP_000895845.1 TatD family hydrolase -
  RCI28_RS28785 (RCI28_28715) rnmV 5559188..5559745 (+) 558 WP_000692841.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=873633 RCI28_RS28770 WP_000843036.1 5555285..5555569(-) (abrB) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=873633 RCI28_RS28770 WP_000843036.1 5555285..5555569(-) (abrB) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851