Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RCI28_RS21475 Genome accession   NZ_CP133362
Coordinates   4177237..4178976 (-) Length   579 a.a.
NCBI ID   WP_000947759.1    Uniprot ID   A0A9W7Q8P2
Organism   Bacillus thuringiensis serovar tenebrionis strain BI 256-82     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4172237..4183976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI28_RS21445 (RCI28_21385) - 4172497..4172730 (+) 234 WP_001190195.1 DUF2627 domain-containing protein -
  RCI28_RS21450 (RCI28_21390) - 4172780..4173508 (-) 729 WP_000172594.1 glycerophosphodiester phosphodiesterase -
  RCI28_RS21455 (RCI28_21395) - 4173559..4173705 (+) 147 WP_001247671.1 YycC family protein -
  RCI28_RS21460 (RCI28_21400) - 4173919..4174482 (-) 564 WP_000791083.1 PRK06770 family protein -
  RCI28_RS21465 (RCI28_21405) spo0A 4174736..4175530 (-) 795 WP_014894889.1 sporulation transcription factor Spo0A Regulator
  RCI28_RS21470 (RCI28_21410) spoIVB 4175820..4177118 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  RCI28_RS21475 (RCI28_21415) recN 4177237..4178976 (-) 1740 WP_000947759.1 DNA repair protein RecN Machinery gene
  RCI28_RS21480 (RCI28_21420) argR 4179241..4179690 (-) 450 WP_001032580.1 arginine repressor ArgR -
  RCI28_RS21485 (RCI28_21425) - 4179833..4180672 (-) 840 WP_000111874.1 TlyA family RNA methyltransferase -
  RCI28_RS21490 (RCI28_21430) dxs 4180676..4182568 (-) 1893 WP_044798095.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RCI28_RS21495 (RCI28_21435) ispA 4182870..4183760 (-) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65835.99 Da        Isoelectric Point: 4.8231

>NTDB_id=873613 RCI28_RS21475 WP_000947759.1 4177237..4178976(-) (recN) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKSLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENYDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KRAGNAEEPLVEGAPVRLTVDGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=873613 RCI28_RS21475 WP_000947759.1 4177237..4178976(-) (recN) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGATCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGAAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAATCACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAATGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCAGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATTATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAGGAAATTTTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAGAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACATCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGCGAATTATG
AAGAGAGCAGGAAATGCAGAAGAACCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGTGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGAGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTAGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601