Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RCI28_RS09965 Genome accession   NZ_CP133362
Coordinates   1883459..1883746 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar tenebrionis strain BI 256-82     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1878459..1888746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI28_RS09945 (RCI28_09925) - 1879640..1879837 (+) 198 WP_042597862.1 DUF4083 domain-containing protein -
  RCI28_RS09950 (RCI28_09930) - 1879866..1880327 (+) 462 WP_000024996.1 NUDIX hydrolase -
  RCI28_RS09955 (RCI28_09935) nadE 1880370..1881188 (-) 819 WP_000174897.1 ammonia-dependent NAD(+) synthetase -
  RCI28_RS09960 (RCI28_09940) - 1881463..1883343 (+) 1881 WP_001025981.1 ABC transporter permease -
  RCI28_RS09965 (RCI28_09945) abrB 1883459..1883746 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RCI28_RS09970 (RCI28_09950) - 1884022..1884969 (+) 948 WP_000099758.1 serine protease -
  RCI28_RS09975 (RCI28_09955) - 1885009..1885317 (-) 309 WP_001259903.1 helix-turn-helix transcriptional regulator -
  RCI28_RS09980 (RCI28_09960) - 1885424..1886359 (+) 936 WP_000877950.1 aldo/keto reductase -
  RCI28_RS09985 (RCI28_09965) - 1886375..1887013 (+) 639 Protein_1908 MFS transporter -
  RCI28_RS09990 (RCI28_09970) - 1887333..1887557 (-) 225 WP_000162602.1 hypothetical protein -
  RCI28_RS09995 (RCI28_09975) - 1887642..1887989 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  RCI28_RS10000 (RCI28_09980) - 1888186..1888713 (+) 528 WP_016077838.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=873602 RCI28_RS09965 WP_000648324.1 1883459..1883746(+) (abrB) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=873602 RCI28_RS09965 WP_000648324.1 1883459..1883746(+) (abrB) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTGCAAAAATATCAACCTTATAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526