Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   WHX55_RS27805 Genome accession   NZ_CP148752
Coordinates   6097670..6100504 (+) Length   944 a.a.
NCBI ID   WP_353741664.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6092670..6105504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS27780 (WHX55_27750) - 6093206..6093766 (+) 561 WP_150726874.1 cysteine hydrolase family protein -
  WHX55_RS27785 (WHX55_27755) - 6093987..6094487 (+) 501 WP_150726873.1 DUF417 family protein -
  WHX55_RS27790 (WHX55_27760) - 6094518..6095390 (-) 873 WP_353741662.1 AraC family transcriptional regulator -
  WHX55_RS27795 (WHX55_27765) ssb 6095553..6096071 (-) 519 WP_007984430.1 single-stranded DNA-binding protein Machinery gene
  WHX55_RS27800 (WHX55_27770) - 6096081..6097478 (-) 1398 WP_353741663.1 MFS transporter -
  WHX55_RS27805 (WHX55_27775) uvrA 6097670..6100504 (+) 2835 WP_353741664.1 excinuclease ABC subunit UvrA Machinery gene
  WHX55_RS27810 (WHX55_27780) bfr 6100570..6101034 (-) 465 WP_150726869.1 bacterioferritin -
  WHX55_RS27815 (WHX55_27785) - 6101183..6102637 (-) 1455 WP_353741665.1 catalase -
  WHX55_RS27820 (WHX55_27790) rplQ 6102875..6103261 (-) 387 WP_046041617.1 50S ribosomal protein L17 -
  WHX55_RS27825 (WHX55_27795) rpoA 6103304..6104305 (-) 1002 WP_007970428.1 DNA-directed RNA polymerase subunit alpha -
  WHX55_RS27830 (WHX55_27800) rpsD 6104328..6104948 (-) 621 WP_003176404.1 30S ribosomal protein S4 -
  WHX55_RS27835 (WHX55_27805) rpsK 6104967..6105356 (-) 390 WP_002555466.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104367.28 Da        Isoelectric Point: 6.9596

>NTDB_id=873535 WHX55_RS27805 WP_353741664.1 6097670..6100504(+) (uvrA) [Pseudomonas fluorescens strain AB1]
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCPDHDIPLEAQTVSQMVDLVLAEPEGSKLMLLAPVIRERKG
EHLSVFEELRAQGFVRARINGKLYELDEAPKLDKQKKHTIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
PGEEMIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLVNGELTLAEGAIRGWDRRNVYYFQML
GSLASHYKFSLEVPFNELPADQQKFILHGSGSQNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFL
STQSCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDASEYFGGLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLSLD
RSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIG
PGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIEVPAKRTPRNKKLSLSLKGARGNNLRNVDLEIPIGLLTCVTGV
SGSGKSTLINNTLFPLSATALNGATTLEAAVHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKSIHETLEMTIEEAREFFD
AVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDH
GNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIAVGTPEEVSEMKQSHTGYYLKPLLERDRA

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=873535 WHX55_RS27805 WP_353741664.1 6097670..6100504(+) (uvrA) [Pseudomonas fluorescens strain AB1]
TTGGACAAGATCCTGATTCGTGGGGCTCGAACCCACAACCTGAAGAACATCGACCTGACCCTGCCACGGGACAAGCTGAT
CGTCATCACCGGCCTGTCCGGCTCCGGCAAGTCATCCCTGGCTTTCGACACCCTGTACGCCGAAGGTCAGCGCCGCTACG
TCGAATCGCTGTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAAAAGCCCGACGTCGACACCATCGAAGGCCTGTCG
CCAGCGATCTCCATCGAACAGAAGTCGACCTCGCACAACCCGCGCTCGACGGTCGGCACCATCACCGAAATCTACGACTA
CCTGCGTCTGCTTTATGCACGCGTGGGTATTCCCCGCTGCCCGGATCACGACATCCCGCTGGAAGCGCAGACCGTCAGCC
AGATGGTCGACCTGGTCCTCGCCGAACCGGAGGGCAGCAAGTTGATGCTGTTGGCGCCGGTCATCCGCGAGCGCAAAGGC
GAGCACCTGTCGGTTTTCGAAGAGCTGCGCGCGCAAGGCTTCGTCCGTGCCCGGATCAACGGCAAGCTTTACGAGCTGGA
CGAAGCGCCCAAGCTCGACAAGCAGAAAAAACACACCATCGATGTCGTGGTCGACCGCTTCAAGGTTCGCGCCGACCTGC
AACAACGCCTGGCCGAATCCTTCGAGACCGCGTTGAAACTGGCGGACGGCATCGCCCTGGTGGCGCCGATGGATGACGAG
CCGGGTGAAGAGATGATCTTCTCCGCACGCTTCGCCTGCCCGATCTGCGGCCACGCGATCAGCGAACTGGAACCCAAGCT
GTTCTCCTTCAACAACCCGGCCGGCGCTTGCCCGACCTGCGATGGCTTGGGGGTGAAGCAGTTCTTCGACATCAAGCGCC
TGGTCAATGGCGAACTGACCCTGGCCGAAGGGGCGATTCGTGGCTGGGACCGGCGTAACGTCTATTACTTCCAGATGCTC
GGCTCGCTGGCCTCGCACTACAAGTTCAGCCTGGAAGTTCCGTTCAACGAACTGCCGGCCGATCAGCAGAAATTCATCCT
GCACGGCAGCGGTTCGCAAAACGTCGACTTCAAATACCTGAACGACCGTGGCGATATCGTCAAACGCTCGCACCCGTTCG
AAGGCATCGTGCCGAACCTGGAACGCCGTTACCGCGAAACCGAATCGGCATCGGTGCGCGAAGAACTGGCCAAGTTCCTC
AGCACCCAGTCGTGCCCGGACTGCCGCGGGACCCGCCTGCGGCGTGAGGCGCGGCATGTGTGGGTCGGCGAGAAAACCCT
GCCGGCAGTGACCAACCTGCCGATCGGCGATGCGTCCGAGTATTTTGGCGGGCTCAAGCTCACCGGCCGGCGTGGCGAAA
TTGCCGACAAGATCCTCAAGGAAATCCGCGAGCGCCTGCAGTTCCTGGTCAACGTCGGCCTCGACTACCTGTCGCTGGAT
CGCAGCGCGGACACCTTGTCCGGTGGCGAGGCCCAGCGCATTCGTCTGGCCAGCCAGATTGGTGCCGGCCTGGTGGGCGT
CCTGTACATCCTCGACGAACCCTCCATCGGCCTGCATCAGCGCGATAACGACCGGCTGCTGGGCACCCTCAAGCATCTGC
GCGATATCGGTAACACGGTGATCGTGGTCGAGCACGACGAAGACGCGATCCGTCTGGCCGACTACGTGGTGGACATCGGC
CCGGGCGCTGGCGTGCACGGCGGGCATATCGTCGCCGAAGGCACACCGGCCGAGGTCATGGCGCATCCGGACTCGCTGAC
GGGCAAATACCTGTCGGGCCGGGTGAAGATCGAAGTCCCGGCCAAGCGCACGCCGCGCAACAAGAAGCTGTCGCTGTCGC
TCAAGGGCGCGCGTGGCAACAACCTGCGCAATGTCGACCTGGAGATTCCGATCGGTCTGCTGACCTGTGTGACCGGCGTG
TCCGGCTCCGGGAAGTCGACGCTGATCAACAACACGCTGTTCCCGCTGAGCGCCACGGCGCTGAATGGCGCCACTACCCT
TGAAGCGGCCGTCCACGACAGCATCAAGGGCCTGGAGCACCTGGACAAGGTCGTCGACATCGACCAGAGCCCGATTGGCC
GTACACCGCGTTCCAACCCGGCTACCTACACCGGATTGTTCACACCGATCCGCGAGTTGTTCGCCGGCGTACCGGAGTCC
CGCTCCCGGGGCTACGGGCCGGGGCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGGCCTGCCAGGGCGACGGCCT
GATCAAAGTCGAGATGCACTTCCTGCCGGACATCTACGTGCCCTGCGACGTGTGCAAGAGCAAGCGTTACAACCGCGAAA
CCCTGGAGATCAAGTACAAGGGCAAGAGCATCCACGAGACCCTCGAGATGACCATCGAGGAAGCACGGGAGTTCTTCGAT
GCCGTACCGGCCCTGGCGCGCAAGCTGCAAACGTTGATGGACGTCGGCCTGTCGTACATCAAGCTGGGGCAATCGGCGAC
CACGCTCTCCGGCGGTGAAGCCCAGCGGGTGAAACTGTCCCGCGAGCTGTCCAAGCGTGATACCGGCAAGACCCTGTACA
TCCTCGATGAACCCACCACCGGGCTGCACTTCGCGGATATCCAGCAACTGCTGGACGTGTTGCATCGCCTGCGCGACCAC
GGCAACACGGTGGTAGTGATCGAACACAACCTGGACGTGATCAAGACCGCTGACTGGCTGGTGGACCTGGGTCCGGAGGG
TGGTTCCAAGGGCGGGCAGATCATTGCCGTCGGCACACCGGAGGAAGTGTCAGAGATGAAGCAATCCCATACCGGTTACT
ACCTCAAGCCGCTGCTGGAACGCGATCGGGCTTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.082

100

0.572
  uvrA Streptococcus pneumoniae TIGR4

57.082

100

0.572
  uvrA Streptococcus pneumoniae D39

57.082

100

0.572