Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RCR42_RS07910 Genome accession   NZ_CP133336
Coordinates   1653008..1653634 (+) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter hormaechei strain CRECL423     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648008..1658634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCR42_RS07890 (RCR42_07890) - 1648407..1650167 (-) 1761 WP_023305819.1 Lon protease family protein -
  RCR42_RS07895 (RCR42_07895) matP 1650354..1650806 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  RCR42_RS07900 (RCR42_07900) ompA 1650872..1651924 (-) 1053 WP_017694761.1 porin OmpA -
  RCR42_RS07905 (RCR42_07905) sulA 1652281..1652790 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  RCR42_RS07910 (RCR42_07910) sxy/tfoX 1653008..1653634 (+) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  RCR42_RS07915 (RCR42_07915) yccS 1653591..1655753 (-) 2163 WP_063152041.1 YccS family putative transporter -
  RCR42_RS07920 (RCR42_07920) - 1655772..1656218 (-) 447 WP_022647660.1 YccF domain-containing protein -
  RCR42_RS07925 (RCR42_07925) helD 1656341..1658395 (+) 2055 WP_063152040.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=873501 RCR42_RS07910 WP_023299743.1 1653008..1653634(+) (sxy/tfoX) [Enterobacter hormaechei strain CRECL423]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=873501 RCR42_RS07910 WP_023299743.1 1653008..1653634(+) (sxy/tfoX) [Enterobacter hormaechei strain CRECL423]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCCCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCGTCCTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572