Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   WHX55_RS11500 Genome accession   NZ_CP148752
Coordinates   2523876..2524580 (-) Length   234 a.a.
NCBI ID   WP_150727256.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2518876..2529580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS11485 (WHX55_11470) - 2519527..2521386 (+) 1860 WP_353742634.1 ABC transporter ATP-binding protein -
  WHX55_RS11490 (WHX55_11475) - 2521693..2522958 (-) 1266 WP_353742635.1 MFS transporter -
  WHX55_RS11495 (WHX55_11480) - 2523139..2523609 (+) 471 WP_353742636.1 Lrp/AsnC family transcriptional regulator -
  WHX55_RS11500 (WHX55_11485) treR 2523876..2524580 (-) 705 WP_150727256.1 trehalose operon repressor Regulator
  WHX55_RS11505 (WHX55_11490) treP 2524809..2526251 (+) 1443 WP_150752351.1 PTS system trehalose-specific EIIBC component -
  WHX55_RS11510 (WHX55_11495) treC 2526368..2528017 (+) 1650 WP_353742637.1 alpha,alpha-phosphotrehalase -
  WHX55_RS11515 (WHX55_11500) - 2528113..2529336 (+) 1224 WP_353742638.1 carbohydrate porin -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26775.25 Da        Isoelectric Point: 6.5017

>NTDB_id=873495 WHX55_RS11500 WP_150727256.1 2523876..2524580(-) (treR) [Pseudomonas fluorescens strain AB1]
MSKYSQIYSDLLTSITTERLERGARLPSETELMESYRASRGTVRQAIELLQERGFAQKIHGKGTFVLSPNPIEFQLGGIV
SFQETHPRLGNDVSTEVVAFEQFPLQGALREHLKAEEGSLITRIKRVRRIDGKRVILDINHFVADLIPGLNCEIAEHSIY
AFIEQTLQLQISYAQRTIEAVPRGKDDQQHLDLEGQSHVIVVSNQTFLQDGRQFEYTESRHTLDKFYFSDVARR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=873495 WHX55_RS11500 WP_150727256.1 2523876..2524580(-) (treR) [Pseudomonas fluorescens strain AB1]
ATGAGCAAATACAGCCAGATCTACAGCGATCTGCTTACCAGCATCACCACCGAACGGCTGGAACGCGGCGCCCGACTGCC
TTCCGAAACCGAATTGATGGAGAGTTACCGGGCCAGTCGCGGTACTGTGCGCCAAGCCATAGAACTGCTTCAGGAACGCG
GTTTCGCGCAAAAAATTCACGGTAAAGGCACCTTCGTGCTGTCGCCCAATCCGATCGAATTCCAGCTCGGCGGTATCGTC
AGTTTCCAGGAAACCCACCCAAGGCTGGGCAATGATGTCAGCACCGAGGTGGTGGCGTTCGAGCAGTTCCCCCTGCAAGG
TGCCTTGCGTGAACACCTGAAAGCCGAAGAAGGTAGCCTGATCACGCGGATCAAACGCGTGCGTCGAATCGATGGCAAAC
GGGTCATCCTCGACATCAACCACTTCGTCGCCGATCTTATTCCGGGGCTGAATTGCGAGATTGCCGAGCATTCGATCTAT
GCCTTCATCGAACAGACGCTGCAACTGCAAATCAGCTACGCCCAGCGCACCATCGAAGCCGTACCGCGAGGCAAGGACGA
CCAGCAGCACCTTGATCTTGAGGGGCAGAGCCATGTGATTGTGGTCAGCAACCAGACCTTTTTGCAGGACGGCCGGCAGT
TCGAGTACACCGAGTCGCGGCATACCCTGGACAAGTTTTACTTTTCGGATGTGGCCAGGCGATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(90-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

38.462

100

0.385